Cow genome map
| Conread name: | Ss1.1-mCP1-MI-P-CP1-nzc-p-10-0-UI.s1.3 |
| Conread position: | 4-211 |
| Cow position: | chr29:45465240-45465035 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 14, 126 |
| Conread position: | 17-209 |
| Cow position: | chr29:103166-103355 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 17-265 |
| Cow position: | chr29:34753122-34752873 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 17, 106 |
| Conread position: | 93-211 |
| Cow position: | chr29:5183524-5183640 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 275-651 |
| Cow position: | chr29:45464537-45464163 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 94 |
| Conread position: | 279-658 |
| Cow position: | chr29:30810804-30811168 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 270 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 257, 89 |
| Conread position: | 295-631 |
| Cow position: | chr29:1714381-1714711 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 161, 75 |
| Conread position: | 305-640 |
| Cow position: | chr29:32640075-32640401 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 173, 52 |
| Conread position: | 310-509 |
| Cow position: | chr29:6470777-6470977 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 153, 60 |
| Conread position: | 335-578 |
| Cow position: | chr29:34752373-34752133 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 135, 35 |
| Conread position: | 336-646 |
| Cow position: | chr29:103882-104189 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 39 |
| Conread position: | 363-648 |
| Cow position: | chr29:11048613-11048909 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 30, 152 |
| Conread position: | 380-565 |
| Cow position: | chr29:34622712-34622527 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 11, 47 |
| Conread position: | 380-657 |
| Cow position: | chr29:21432013-21431725 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 11, 116 |
| Conread position: | 391-525 |
| Cow position: | chr29:6874507-6874369 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 82, 135 |
| Conread position: | 392-610 |
| Cow position: | chr29:22318593-22318371 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 74, 120 |
| Conread position: | 392-629 |
| Cow position: | chr29:35196061-35196295 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 78, 121 |
| Conread position: | 392-640 |
| Cow position: | chr29:10848742-10848485 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 68, 121 |
| Conread position: | 392-640 |
| Cow position: | chr29:16769509-16769755 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 78, 120 |
| Conread position: | 392-640 |
| Cow position: | chr29:27041393-27041141 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 78, 120 |
| Conread position: | 392-655 |
| Cow position: | chr29:2751029-2750768 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 83, 122 |
| Conread position: | 421-679 |
| Cow position: | chr29:15950790-15950542 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 45, 87 |
| Conread position: | 445-657 |
| Cow position: | chr29:8663681-8663893 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 30, 67 |
Show alignments to all cow chromosomes.