Cow genome map
| Conread name: | Ss1.1-mCP1-MI-P-CP1-nzc-p-10-0-UI.s1.3 |
| Conread position: | 1-159 |
| Cow position: | chr3:60891176-60891331 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 31, 13 |
| Conread position: | 1-233 |
| Cow position: | chr3:17950702-17950932 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 32, 12 |
| Conread position: | 1-238 |
| Cow position: | chr3:3907900-3907663 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 196, 32 |
| Conread position: | 5-244 |
| Cow position: | chr3:52865710-52865475 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 28, 15 |
| Conread position: | 5-639 |
| Cow position: | chr3:27906394-27905755 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 183 |
| Conread position: | 5-657 |
| Cow position: | chr3:3979304-3979926 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 157 |
| Conread position: | 6-389 |
| Cow position: | chr3:24593105-24592726 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 15 |
| Conread position: | 17-195 |
| Cow position: | chr3:2910013-2909836 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 15, 33 |
| Conread position: | 17-657 |
| Cow position: | chr3:64359258-64358626 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 76 |
| Conread position: | 20-211 |
| Cow position: | chr3:39325748-39325944 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 12, 158 |
| Conread position: | 61-233 |
| Cow position: | chr3:63006065-63005893 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 93, 98 |
| Conread position: | 69-233 |
| Cow position: | chr3:15054997-15054835 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 241-633 |
| Cow position: | chr3:57500386-57500001 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 284 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 225, 129 |
| Conread position: | 270-573 |
| Cow position: | chr3:50011568-50011869 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 101 |
| Conread position: | 275-624 |
| Cow position: | chr3:48329577-48329917 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 87 |
| Conread position: | 279-517 |
| Cow position: | chr3:80870901-80871142 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 193, 91 |
| Conread position: | 279-633 |
| Cow position: | chr3:14755334-14754983 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 90 |
| Conread position: | 279-657 |
| Cow position: | chr3:18357706-18357342 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 179, 48 |
| Conread position: | 279-657 |
| Cow position: | chr3:58208914-58208556 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 196, 29 |
| Conread position: | 280-657 |
| Cow position: | chr3:36099547-36099174 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 265 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 181, 89 |
| Conread position: | 281-637 |
| Cow position: | chr3:14587495-14587829 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 264, 26 |
| Conread position: | 281-656 |
| Cow position: | chr3:32843265-32842892 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 274 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 16, 70 |
| Conread position: | 285-647 |
| Cow position: | chr3:52861047-52861394 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 175, 12 |
| Conread position: | 286-611 |
| Cow position: | chr3:26948497-26948826 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 237 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 164, 84 |
| Conread position: | 288-631 |
| Cow position: | chr3:34094222-34093883 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 236 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 173, 57 |
| Conread position: | 292-658 |
| Cow position: | chr3:54865535-54865172 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 264 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 156, 58 |
| Conread position: | 310-657 |
| Cow position: | chr3:15177512-15177859 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 254 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 165, 8 |
| Conread position: | 310-657 |
| Cow position: | chr3:19692891-19692544 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 248 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 156, 60 |
| Conread position: | 355-557 |
| Cow position: | chr3:60210901-60210701 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 107, 17 |
| Conread position: | 380-640 |
| Cow position: | chr3:31354972-31354716 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 7, 134 |
| Conread position: | 381-632 |
| Cow position: | chr3:34396772-34396519 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 6, 133 |
| Conread position: | 382-657 |
| Cow position: | chr3:24592346-24592076 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 218 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 91, 113 |
| Conread position: | 386-648 |
| Cow position: | chr3:39325965-39326215 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 92, 127 |
| Conread position: | 386-651 |
| Cow position: | chr3:2909817-2909551 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 64, 132 |
| Conread position: | 389-657 |
| Cow position: | chr3:52865488-52865211 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 211 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 89, 125 |
| Conread position: | 390-562 |
| Cow position: | chr3:14440486-14440315 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 78, 24 |
| Conread position: | 392-565 |
| Cow position: | chr3:5047891-5047715 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 78, 121 |
| Conread position: | 392-566 |
| Cow position: | chr3:55230411-55230233 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 28, 121 |
| Conread position: | 392-632 |
| Cow position: | chr3:6684730-6684976 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 81, 120 |
| Conread position: | 392-632 |
| Cow position: | chr3:44255688-44255445 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 152, 115 |
| Conread position: | 392-639 |
| Cow position: | chr3:3053895-3054132 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 145, 57 |
| Conread position: | 392-640 |
| Cow position: | chr3:2633212-2633464 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 78, 129 |
| Conread position: | 392-640 |
| Cow position: | chr3:9716097-9716348 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 78, 94 |
| Conread position: | 392-643 |
| Cow position: | chr3:42580665-42580425 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 80, 73 |
| Conread position: | 392-646 |
| Cow position: | chr3:66637331-66637589 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 79, 120 |
| Conread position: | 392-657 |
| Cow position: | chr3:14634814-14634544 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 65, 117 |
| Conread position: | 392-657 |
| Cow position: | chr3:49677021-49677296 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 75, 130 |
| Conread position: | 392-657 |
| Cow position: | chr3:63005888-63005608 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 74, 198 |
| Conread position: | 392-689 |
| Cow position: | chr3:19801693-19801995 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 82, 8 |
| Conread position: | 393-657 |
| Cow position: | chr3:17950938-17951202 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 204 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 82, 102 |
Show alignments to all cow chromosomes.