Cow genome map
| Conread name: | Ss1.1-mCP1-MI-P-CP1-nzc-p-10-0-UI.s1.3 |
| Conread position: | 1-238 |
| Cow position: | chr5:61274233-61273997 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 31, 17 |
| Conread position: | 1-657 |
| Cow position: | chr5:46631608-46630979 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 15 |
| Conread position: | 5-238 |
| Cow position: | chr5:41963989-41963758 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 14, 72 |
| Conread position: | 17-194 |
| Cow position: | chr5:27061677-27061499 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 17, 158 |
| Conread position: | 17-233 |
| Cow position: | chr5:41530615-41530400 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 36 |
| Conread position: | 17-238 |
| Cow position: | chr5:29456575-29456799 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 18, 166 |
| Conread position: | 34-226 |
| Cow position: | chr5:32674771-32674578 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 132, 27 |
| Conread position: | 123-471 |
| Cow position: | chr5:6518761-6519106 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 55 |
| Conread position: | 156-657 |
| Cow position: | chr5:23688534-23688038 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 23 |
| Conread position: | 235-463 |
| Cow position: | chr5:28044887-28044673 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 272-657 |
| Cow position: | chr5:58746947-58747324 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 9 |
| Conread position: | 275-649 |
| Cow position: | chr5:26090791-26090429 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 32 |
| Conread position: | 276-648 |
| Cow position: | chr5:27488094-27488453 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 92 |
| Conread position: | 279-640 |
| Cow position: | chr5:34167134-34167476 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 192, 46 |
| Conread position: | 280-657 |
| Cow position: | chr5:23227329-23227693 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 258, 53 |
| Conread position: | 281-656 |
| Cow position: | chr5:24151136-24151515 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 10, 66 |
| Conread position: | 288-655 |
| Cow position: | chr5:27061002-27060641 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 80 |
| Conread position: | 288-657 |
| Cow position: | chr5:27000274-27000639 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 256 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 174, 82 |
| Conread position: | 303-657 |
| Cow position: | chr5:52432924-52433276 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 79, 199 |
| Conread position: | 322-559 |
| Cow position: | chr5:27910203-27909960 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 35, 60 |
| Conread position: | 380-565 |
| Cow position: | chr5:28030673-28030861 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 11, 133 |
| Conread position: | 380-565 |
| Cow position: | chr5:39165611-39165422 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 11, 133 |
| Conread position: | 380-565 |
| Cow position: | chr5:49181465-49181654 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 11, 133 |
| Conread position: | 382-640 |
| Cow position: | chr5:27652789-27652525 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 9, 26 |
| Conread position: | 384-657 |
| Cow position: | chr5:61274006-61273729 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 89, 130 |
| Conread position: | 387-559 |
| Cow position: | chr5:4020062-4019890 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 79, 122 |
| Conread position: | 390-657 |
| Cow position: | chr5:49594306-49594022 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 88, 74 |
| Conread position: | 392-640 |
| Cow position: | chr5:26768993-26769249 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 78, 119 |
| Conread position: | 392-640 |
| Cow position: | chr5:29008557-29008797 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 83, 120 |
| Conread position: | 392-646 |
| Cow position: | chr5:4384397-4384652 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 10, 122 |
| Conread position: | 392-648 |
| Cow position: | chr5:12682332-12682078 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 79, 120 |
| Conread position: | 392-655 |
| Cow position: | chr5:46658872-46659141 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 83, 120 |
| Conread position: | 392-656 |
| Cow position: | chr5:41963759-41963498 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 207 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 78, 120 |
| Conread position: | 392-657 |
| Cow position: | chr5:23716778-23716512 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 74, 116 |
| Conread position: | 392-657 |
| Cow position: | chr5:32674566-32674295 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 83, 29 |
| Conread position: | 393-655 |
| Cow position: | chr5:28006402-28006662 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 61, 121 |
| Conread position: | 402-657 |
| Cow position: | chr5:41530393-41530137 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 58, 114 |
| Conread position: | 412-657 |
| Cow position: | chr5:29456813-29457060 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 48, 102 |
| Conread position: | 424-565 |
| Cow position: | chr5:32734012-32733873 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 124, 83 |
| Conread position: | 481-656 |
| Cow position: | chr5:6519160-6519331 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 66, 32 |
Show alignments to all cow chromosomes.