Cow genome map
| Conread name: | Ss1.1-mCP1-MI-P-CP1-nzc-p-10-0-UI.s1.3 |
| Conread position: | 1-274 |
| Cow position: | chr7:20431380-20431109 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 17 |
| Conread position: | 1-277 |
| Cow position: | chr7:47048994-47049269 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 56, 17 |
| Conread position: | 5-238 |
| Cow position: | chr7:53989932-53990166 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 30, 13 |
| Conread position: | 5-425 |
| Cow position: | chr7:63019894-63020319 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 174 |
| Conread position: | 17-238 |
| Cow position: | chr7:29371567-29371350 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 17, 139 |
| Conread position: | 275-559 |
| Cow position: | chr7:63961414-63961132 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 101 |
| Conread position: | 275-566 |
| Cow position: | chr7:39556933-39556644 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 187, 95 |
| Conread position: | 275-655 |
| Cow position: | chr7:47049722-47050086 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 90 |
| Conread position: | 276-576 |
| Cow position: | chr7:49445591-49445891 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 133 |
| Conread position: | 279-476 |
| Cow position: | chr7:25249866-25250061 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 279-566 |
| Cow position: | chr7:22680710-22680424 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 79, 92 |
| Conread position: | 279-571 |
| Cow position: | chr7:23447820-23447544 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 266, 20 |
| Conread position: | 279-655 |
| Cow position: | chr7:31864175-31864523 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 188, 46 |
| Conread position: | 279-657 |
| Cow position: | chr7:49289875-49290265 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 262 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 190, 31 |
| Conread position: | 286-656 |
| Cow position: | chr7:26883443-26883808 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 8 |
| Conread position: | 289-657 |
| Cow position: | chr7:60858041-60857683 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 10 |
| Conread position: | 297-656 |
| Cow position: | chr7:20429687-20429338 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 72 |
| Conread position: | 299-472 |
| Cow position: | chr7:54886828-54886997 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 302-657 |
| Cow position: | chr7:37020980-37021323 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 163, 71 |
| Conread position: | 337-657 |
| Cow position: | chr7:64394875-64395171 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 129, 42 |
| Conread position: | 358-559 |
| Cow position: | chr7:35288257-35288052 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 18, 157 |
| Conread position: | 358-657 |
| Cow position: | chr7:21309569-21309888 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 18, 238 |
| Conread position: | 362-656 |
| Cow position: | chr7:30156931-30156625 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 14, 32 |
| Conread position: | 366-648 |
| Cow position: | chr7:20107163-20106883 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 88, 131 |
| Conread position: | 368-553 |
| Cow position: | chr7:26890128-26890317 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 17, 9 |
| Conread position: | 380-565 |
| Cow position: | chr7:38535945-38536130 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 90, 29 |
| Conread position: | 380-565 |
| Cow position: | chr7:67416461-67416651 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 11, 134 |
| Conread position: | 380-643 |
| Cow position: | chr7:18936166-18935898 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 79, 131 |
| Conread position: | 380-648 |
| Cow position: | chr7:21242715-21242444 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 16, 133 |
| Conread position: | 381-655 |
| Cow position: | chr7:67425771-67426048 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 10, 131 |
| Conread position: | 392-616 |
| Cow position: | chr7:41489547-41489775 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 78, 119 |
| Conread position: | 392-648 |
| Cow position: | chr7:68779456-68779203 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 11, 123 |
| Conread position: | 392-649 |
| Cow position: | chr7:48632806-48633064 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 191 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 28, 119 |
| Conread position: | 392-656 |
| Cow position: | chr7:29371351-29371091 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 147, 72 |
| Conread position: | 392-657 |
| Cow position: | chr7:51013374-51013640 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 203 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 78, 122 |
| Conread position: | 399-657 |
| Cow position: | chr7:53014903-53015164 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 66, 114 |
| Conread position: | 402-648 |
| Cow position: | chr7:53990171-53990416 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 71, 110 |
| Conread position: | 429-648 |
| Cow position: | chr7:54196297-54196081 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 41, 65 |
| Conread position: | 491-648 |
| Cow position: | chr7:63020354-63020511 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 75, 25 |
Show alignments to all cow chromosomes.