Cow genome map
| Conread name: | Ss1.1-mCP1-MI-P-CP1-nzc-p-10-0-UI.s1.3 |
| Conread position: | 1-138 |
| Cow position: | chr9:13219256-13219391 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 33, 17 |
| Conread position: | 1-221 |
| Cow position: | chr9:3802528-3802744 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 33, 13 |
| Conread position: | 4-220 |
| Cow position: | chr9:18002263-18002479 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 15, 171 |
| Conread position: | 31-210 |
| Cow position: | chr9:11321530-11321701 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 173-558 |
| Cow position: | chr9:13219403-13219775 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 85 |
| Conread position: | 276-666 |
| Cow position: | chr9:64118000-64118372 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 60 |
| Conread position: | 279-511 |
| Cow position: | chr9:3579952-3579720 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 24, 74 |
| Conread position: | 279-526 |
| Cow position: | chr9:8167079-8166835 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 17, 92 |
| Conread position: | 279-612 |
| Cow position: | chr9:23400779-23401114 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 241 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 172, 53 |
| Conread position: | 279-630 |
| Cow position: | chr9:18835862-18836197 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 246 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 194, 52 |
| Conread position: | 279-647 |
| Cow position: | chr9:20310575-20310216 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 270 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 55, 49 |
| Conread position: | 279-649 |
| Cow position: | chr9:6111788-6111443 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 262 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 190, 53 |
| Conread position: | 279-657 |
| Cow position: | chr9:34107723-34107348 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 58 |
| Conread position: | 280-499 |
| Cow position: | chr9:6973222-6973444 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 5, 14 |
| Conread position: | 280-657 |
| Cow position: | chr9:4983926-4984284 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 259 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 186, 29 |
| Conread position: | 281-657 |
| Cow position: | chr9:10318650-10319016 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 164, 81 |
| Conread position: | 303-538 |
| Cow position: | chr9:240919-240686 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 91, 33 |
| Conread position: | 313-656 |
| Cow position: | chr9:14962264-14961926 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 152, 57 |
| Conread position: | 314-571 |
| Cow position: | chr9:26713123-26712869 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 147, 47 |
| Conread position: | 322-687 |
| Cow position: | chr9:35657169-35657526 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 242 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 129, 41 |
| Conread position: | 332-657 |
| Cow position: | chr9:26237313-26237617 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 127, 40 |
| Conread position: | 373-648 |
| Cow position: | chr9:832219-831933 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 89, 5 |
| Conread position: | 380-607 |
| Cow position: | chr9:10314632-10314864 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 11, 141 |
| Conread position: | 385-552 |
| Cow position: | chr9:2488757-2488586 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 24, 128 |
| Conread position: | 387-656 |
| Cow position: | chr9:3802753-3803019 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 79, 107 |
| Conread position: | 392-548 |
| Cow position: | chr9:45872564-45872718 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 74, 117 |
| Conread position: | 392-611 |
| Cow position: | chr9:59443070-59443292 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 61, 122 |
| Conread position: | 392-640 |
| Cow position: | chr9:8969792-8969536 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 79, 120 |
| Conread position: | 392-640 |
| Cow position: | chr9:28626761-28626521 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 78, 120 |
| Conread position: | 395-627 |
| Cow position: | chr9:54359851-54360088 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 71, 117 |
Show alignments to all cow chromosomes.