Cow genome map
| Conread name: | Ss1.1-mCP1-MI-P-CP1-nzc-p-10-0-UI.s1.3 |
| Conread position: | 1-226 |
| Cow position: | chrX:29795190-29794967 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 27, 38 |
| Conread position: | 1-238 |
| Cow position: | chrX:25041516-25041279 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 4-221 |
| Cow position: | chrX:21585934-21586148 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 31, 14 |
| Conread position: | 11-212 |
| Cow position: | chrX:28552941-28553143 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 24, 163 |
| Conread position: | 19-233 |
| Cow position: | chrX:31371889-31372100 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 16, 141 |
| Conread position: | 41-267 |
| Cow position: | chrX:17670007-17669781 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 171, 132 |
| Conread position: | 279-552 |
| Cow position: | chrX:30369938-30369674 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 127, 91 |
| Conread position: | 279-656 |
| Cow position: | chrX:31079576-31079940 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 240 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 24, 33 |
| Conread position: | 279-657 |
| Cow position: | chrX:13051725-13052095 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 91 |
| Conread position: | 279-657 |
| Cow position: | chrX:18532011-18532415 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 176 |
| Conread position: | 279-657 |
| Cow position: | chrX:22131662-22131281 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 91 |
| Conread position: | 280-655 |
| Cow position: | chrX:2142356-2142721 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 261 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 156, 90 |
| Conread position: | 281-575 |
| Cow position: | chrX:34987703-34987988 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 182, 89 |
| Conread position: | 285-571 |
| Cow position: | chrX:19185893-19185609 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 173, 14 |
| Conread position: | 286-656 |
| Cow position: | chrX:17669359-17668995 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 91 |
| Conread position: | 298-476 |
| Cow position: | chrX:20699344-20699171 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 310-548 |
| Cow position: | chrX:24376437-24376671 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 138, 60 |
| Conread position: | 316-614 |
| Cow position: | chrX:21586087-21586392 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 41, 205 |
| Conread position: | 325-447 |
| Cow position: | chrX:7734290-7734409 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 350-565 |
| Cow position: | chrX:39716938-39717151 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 41, 30 |
| Conread position: | 369-545 |
| Cow position: | chrX:12974539-12974361 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 88, 143 |
| Conread position: | 379-553 |
| Cow position: | chrX:28604935-28604756 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 8, 137 |
| Conread position: | 379-648 |
| Cow position: | chrX:28549034-28549303 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 135 |
| Conread position: | 380-640 |
| Cow position: | chrX:25332228-25332493 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 11, 135 |
| Conread position: | 381-565 |
| Cow position: | chrX:31372092-31372279 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 92, 133 |
| Conread position: | 389-657 |
| Cow position: | chrX:2788069-2787803 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 65, 134 |
| Conread position: | 390-657 |
| Cow position: | chrX:28553166-28553433 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 200 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 85, 14 |
| Conread position: | 392-559 |
| Cow position: | chrX:31034843-31035012 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 83, 126 |
| Conread position: | 392-580 |
| Cow position: | chrX:30144350-30144157 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 77, 108 |
| Conread position: | 392-640 |
| Cow position: | chrX:21602048-21602300 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 80, 61 |
| Conread position: | 392-640 |
| Cow position: | chrX:30990793-30990541 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 33, 124 |
| Conread position: | 392-652 |
| Cow position: | chrX:35016988-35017257 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 78, 121 |
| Conread position: | 395-643 |
| Cow position: | chrX:40057898-40057645 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 74, 37 |
| Conread position: | 395-657 |
| Cow position: | chrX:29794953-29794694 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 67, 21 |
| Conread position: | 400-657 |
| Cow position: | chrX:15598086-15598339 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 62, 111 |
| Conread position: | 402-648 |
| Cow position: | chrX:29283890-29284135 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 73, 96 |
| Conread position: | 424-639 |
| Cow position: | chrX:13007439-13007219 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 46, 70 |
| Conread position: | 431-656 |
| Cow position: | chrX:35019842-35020073 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 10, 73 |
| Conread position: | 469-664 |
| Cow position: | chrX:29883020-29882827 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 76, 39 |
Show alignments to all cow chromosomes.