Cow genome map
| Conread name: | Ss1.1-raor015_j22.5 |
| Conread position: | 528-813 |
| Cow position: | chr10:27376805-27376531 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 30, 68 |
| Conread position: | 552-923 |
| Cow position: | chr10:32324536-32324161 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 105 |
| Conread position: | 554-909 |
| Cow position: | chr10:33962911-33963282 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 250 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 76, 29 |
| Conread position: | 555-724 |
| Cow position: | chr10:13219614-13219437 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 19, 132 |
| Conread position: | 557-813 |
| Cow position: | chr10:27967160-27967437 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 73, 167 |
| Conread position: | 557-924 |
| Cow position: | chr10:17441209-17441576 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 153 |
| Conread position: | 558-828 |
| Cow position: | chr10:19594027-19593765 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 73, 64 |
| Conread position: | 558-919 |
| Cow position: | chr10:23305259-23304897 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 242 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 163, 73 |
| Conread position: | 558-922 |
| Cow position: | chr10:68351444-68351816 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 96 |
| Conread position: | 558-923 |
| Cow position: | chr10:28021485-28021859 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 52 |
| Conread position: | 558-923 |
| Cow position: | chr10:63711094-63711472 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 246 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 35, 115 |
| Conread position: | 560-725 |
| Cow position: | chr10:17077383-17077216 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 71, 99 |
| Conread position: | 566-813 |
| Cow position: | chr10:40448895-40448640 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 65, 139 |
| Conread position: | 567-813 |
| Cow position: | chr10:50723107-50723355 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 68, 187 |
| Conread position: | 621-917 |
| Cow position: | chr10:31820494-31820799 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 38 |
| Conread position: | 630-846 |
| Cow position: | chr10:15516010-15515791 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 70, 59 |
| Conread position: | 641-913 |
| Cow position: | chr10:6650723-6650452 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 7, 114 |
| Conread position: | 741-923 |
| Cow position: | chr10:8690275-8690085 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 755-924 |
| Cow position: | chr10:17077078-17076912 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 53, 103 |
| Conread position: | 759-921 |
| Cow position: | chr10:21388389-21388210 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 158 |
| Conread position: | 759-921 |
| Cow position: | chr10:32983611-32983433 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 759-921 |
| Cow position: | chr10:40718162-40718001 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 49, 94 |
| Conread position: | 759-923 |
| Cow position: | chr10:48354897-48355057 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 49, 41 |
| Conread position: | 759-924 |
| Cow position: | chr10:36036183-36036013 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 51, 143 |
| Conread position: | 760-921 |
| Cow position: | chr10:60611190-60611021 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 761-924 |
| Cow position: | chr10:66000824-66000653 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 47, 167 |
| Conread position: | 762-921 |
| Cow position: | chr10:32912473-32912625 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 46, 108 |
Show alignments to all cow chromosomes.