Cow genome map
| Conread name: | Ss1.1-raor015_j22.5 |
| Conread position: | 525-859 |
| Cow position: | chr11:83790035-83789705 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 73, 174 |
| Conread position: | 551-923 |
| Cow position: | chr11:55010505-55010885 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 66 |
| Conread position: | 552-741 |
| Cow position: | chr11:41459793-41459989 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 552-806 |
| Cow position: | chr11:67545289-67545536 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 76, 7 |
| Conread position: | 553-918 |
| Cow position: | chr11:21621817-21622193 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 262 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 76, 65 |
| Conread position: | 557-693 |
| Cow position: | chr11:35732574-35732716 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 557-902 |
| Cow position: | chr11:73450077-73450427 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 101 |
| Conread position: | 557-918 |
| Cow position: | chr11:53680384-53680004 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 51, 180 |
| Conread position: | 557-924 |
| Cow position: | chr11:16197353-16197717 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 29 |
| Conread position: | 558-703 |
| Cow position: | chr11:17368198-17368050 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 60, 96 |
| Conread position: | 558-806 |
| Cow position: | chr11:33913194-33912950 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 172, 68 |
| Conread position: | 558-812 |
| Cow position: | chr11:39660851-39660594 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 75, 110 |
| Conread position: | 558-921 |
| Cow position: | chr11:64125547-64125165 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 34, 199 |
| Conread position: | 558-923 |
| Cow position: | chr11:64888478-64888108 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 18 |
| Conread position: | 558-923 |
| Cow position: | chr11:82102627-82103001 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 99 |
| Conread position: | 564-806 |
| Cow position: | chr11:72088194-72088436 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 27, 96 |
| Conread position: | 591-921 |
| Cow position: | chr11:32601203-32600877 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 254 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 42, 66 |
| Conread position: | 595-879 |
| Cow position: | chr11:13737789-13737495 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 40, 163 |
| Conread position: | 708-923 |
| Cow position: | chr11:2421535-2421317 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 175 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 19, 43 |
| Conread position: | 718-922 |
| Cow position: | chr11:37032088-37032292 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 94, 31 |
| Conread position: | 724-924 |
| Cow position: | chr11:75260257-75260050 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 88, 24 |
| Conread position: | 759-920 |
| Cow position: | chr11:5188517-5188350 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 48, 129 |
| Conread position: | 759-922 |
| Cow position: | chr11:5144201-5144369 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 49, 112 |
| Conread position: | 759-922 |
| Cow position: | chr11:5251758-5251927 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 759-923 |
| Cow position: | chr11:17706803-17706633 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 760-924 |
| Cow position: | chr11:37916062-37915893 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 51, 129 |
| Conread position: | 761-905 |
| Cow position: | chr11:34413775-34413925 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 46, 140 |
| Conread position: | 761-918 |
| Cow position: | chr11:75202188-75202030 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 47, 13 |
| Conread position: | 761-920 |
| Cow position: | chr11:18480600-18480760 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 47, 64 |
| Conread position: | 761-922 |
| Cow position: | chr11:6605104-6604937 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 47, 12 |
| Conread position: | 762-921 |
| Cow position: | chr11:11683066-11682901 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 46, 130 |
| Conread position: | 762-922 |
| Cow position: | chr11:36901173-36901339 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 50, 11 |
| Conread position: | 762-923 |
| Cow position: | chr11:42471720-42471890 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 779-921 |
| Cow position: | chr11:61286751-61286902 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 17, 0 |
Show alignments to all cow chromosomes.