Cow genome map
| Conread name: | Ss1.1-raor015_j22.5 |
| Conread position: | 535-923 |
| Cow position: | chr12:24176956-24176575 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 53 |
| Conread position: | 542-806 |
| Cow position: | chr12:13024745-13025011 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 49, 119 |
| Conread position: | 547-748 |
| Cow position: | chr12:40929384-40929592 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 14, 46 |
| Conread position: | 552-923 |
| Cow position: | chr12:36596458-36596819 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 262 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 89, 40 |
| Conread position: | 553-865 |
| Cow position: | chr12:4497726-4498030 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 234 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 80, 202 |
| Conread position: | 557-797 |
| Cow position: | chr12:24012100-24012348 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 74, 87 |
| Conread position: | 558-741 |
| Cow position: | chr12:12009460-12009647 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 72, 110 |
| Conread position: | 558-804 |
| Cow position: | chr12:8640286-8640531 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 72, 105 |
| Conread position: | 558-923 |
| Cow position: | chr12:24544697-24545055 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 25 |
| Conread position: | 558-923 |
| Cow position: | chr12:28545653-28545289 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 66 |
| Conread position: | 558-924 |
| Cow position: | chr12:30190332-30189947 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 38, 196 |
| Conread position: | 559-811 |
| Cow position: | chr12:5300393-5300645 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 69, 196 |
| Conread position: | 566-923 |
| Cow position: | chr12:15382965-15383328 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 95 |
| Conread position: | 571-921 |
| Cow position: | chr12:42874202-42874549 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 21, 152 |
| Conread position: | 585-812 |
| Cow position: | chr12:13647129-13647360 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 7, 75 |
| Conread position: | 586-918 |
| Cow position: | chr12:3139496-3139151 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 46, 170 |
| Conread position: | 655-923 |
| Cow position: | chr12:30922437-30922160 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 97 |
| Conread position: | 669-924 |
| Cow position: | chr12:32954811-32955068 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 58, 80 |
| Conread position: | 726-920 |
| Cow position: | chr12:1435751-1435552 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 82, 23 |
| Conread position: | 727-919 |
| Cow position: | chr12:12010194-12010389 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 85, 20 |
| Conread position: | 732-921 |
| Cow position: | chr12:19189896-19189703 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 37, 16 |
| Conread position: | 754-916 |
| Cow position: | chr12:34408523-34408693 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 56, 134 |
| Conread position: | 762-921 |
| Cow position: | chr12:43972071-43972236 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 49, 155 |
Show alignments to all cow chromosomes.