Cow genome map
| Conread name: | Ss1.1-raor015_j22.5 |
| Conread position: | 555-688 |
| Cow position: | chr16:29182298-29182435 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 74, 39 |
| Conread position: | 557-923 |
| Cow position: | chr16:33129014-33129373 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 95 |
| Conread position: | 558-725 |
| Cow position: | chr16:32174044-32173874 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 75, 97 |
| Conread position: | 558-915 |
| Cow position: | chr16:9252228-9252612 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 101 |
| Conread position: | 558-921 |
| Cow position: | chr16:16332031-16332398 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 33, 143 |
| Conread position: | 558-924 |
| Cow position: | chr16:54011846-54011473 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 238 |
| Conread position: | 561-771 |
| Cow position: | chr16:56599155-56599370 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 35, 31 |
| Conread position: | 567-918 |
| Cow position: | chr16:19711141-19711488 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 231 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 66, 89 |
| Conread position: | 568-923 |
| Cow position: | chr16:45573201-45572823 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 15 |
| Conread position: | 569-813 |
| Cow position: | chr16:51098258-51098497 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 66, 165 |
| Conread position: | 589-813 |
| Cow position: | chr16:27159107-27159329 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 44, 163 |
| Conread position: | 595-807 |
| Cow position: | chr16:36918599-36918801 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 37, 63 |
| Conread position: | 595-924 |
| Cow position: | chr16:49898259-49898594 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 138 |
| Conread position: | 596-810 |
| Cow position: | chr16:17034562-17034345 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 37, 12 |
| Conread position: | 631-924 |
| Cow position: | chr16:15878677-15878978 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 220 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 101, 23 |
| Conread position: | 636-810 |
| Cow position: | chr16:9574695-9574867 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 79, 109 |
| Conread position: | 752-921 |
| Cow position: | chr16:8786528-8786705 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 759-923 |
| Cow position: | chr16:33426736-33426568 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 53, 25 |
| Conread position: | 761-923 |
| Cow position: | chr16:15126132-15125970 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 51, 88 |
| Conread position: | 762-920 |
| Cow position: | chr16:19937624-19937456 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 46, 70 |
| Conread position: | 762-921 |
| Cow position: | chr16:26065834-26065667 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 46, 98 |
| Conread position: | 762-921 |
| Cow position: | chr16:27974445-27974613 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 762-921 |
| Cow position: | chr16:32884849-32884679 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 762-922 |
| Cow position: | chr16:33595105-33594938 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 50, 0 |
Show alignments to all cow chromosomes.