Cow genome map
| Conread name: | Ss1.1-raor015_j22.5 |
| Conread position: | 531-921 |
| Cow position: | chr17:21613303-21613702 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 65 |
| Conread position: | 557-802 |
| Cow position: | chr17:1230586-1230338 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 73, 89 |
| Conread position: | 557-806 |
| Cow position: | chr17:20318398-20318146 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 35, 100 |
| Conread position: | 557-821 |
| Cow position: | chr17:18888028-18888289 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 82, 29 |
| Conread position: | 557-922 |
| Cow position: | chr17:1262560-1262192 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 39, 29 |
| Conread position: | 557-923 |
| Cow position: | chr17:22519846-22520213 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 98 |
| Conread position: | 558-810 |
| Cow position: | chr17:33244439-33244689 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 74, 16 |
| Conread position: | 558-820 |
| Cow position: | chr17:23551054-23551307 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 33, 79 |
| Conread position: | 558-831 |
| Cow position: | chr17:1554690-1554429 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 165, 53 |
| Conread position: | 558-923 |
| Cow position: | chr17:12740195-12739839 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 163 |
| Conread position: | 558-924 |
| Cow position: | chr17:22581439-22581807 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 106 |
| Conread position: | 559-812 |
| Cow position: | chr17:10049181-10048921 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 73, 91 |
| Conread position: | 567-921 |
| Cow position: | chr17:20194432-20194062 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 28, 208 |
| Conread position: | 571-815 |
| Cow position: | chr17:31996568-31996816 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 22, 178 |
| Conread position: | 582-923 |
| Cow position: | chr17:38875220-38874871 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 75 |
| Conread position: | 584-813 |
| Cow position: | chr17:30149402-30149177 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 7, 47 |
| Conread position: | 591-805 |
| Cow position: | chr17:21605655-21605443 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 40, 68 |
| Conread position: | 595-918 |
| Cow position: | chr17:14610370-14610041 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 233 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 38, 158 |
| Conread position: | 754-921 |
| Cow position: | chr17:25546429-25546249 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 754-921 |
| Cow position: | chr17:43730261-43730430 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 57, 112 |
| Conread position: | 759-921 |
| Cow position: | chr17:1491093-1491255 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 49, 110 |
| Conread position: | 759-921 |
| Cow position: | chr17:1730061-1730229 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 55, 25 |
| Conread position: | 759-923 |
| Cow position: | chr17:25557119-25556963 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 107, 38 |
| Conread position: | 760-907 |
| Cow position: | chr17:892097-891943 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 760-921 |
| Cow position: | chr17:11124822-11124661 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 48, 139 |
| Conread position: | 761-921 |
| Cow position: | chr17:42337558-42337729 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 762-921 |
| Cow position: | chr17:6762944-6763110 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 762-921 |
| Cow position: | chr17:17642050-17641883 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 762-921 |
| Cow position: | chr17:21460811-21460976 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 768-922 |
| Cow position: | chr17:5348419-5348260 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 768-924 |
| Cow position: | chr17:17449352-17449189 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 770-923 |
| Cow position: | chr17:23564843-23564999 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 38, 86 |
| Conread position: | 777-921 |
| Cow position: | chr17:1757097-1756947 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 31, 0 |
Show alignments to all cow chromosomes.