Cow genome map
| Conread name: | Ss1.1-raor015_j22.5 |
| Conread position: | 553-859 |
| Cow position: | chr25:11486818-11487130 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 77, 6 |
| Conread position: | 557-780 |
| Cow position: | chr25:3691547-3691330 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 143, 76 |
| Conread position: | 557-872 |
| Cow position: | chr25:36157894-36157578 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 25, 39 |
| Conread position: | 558-711 |
| Cow position: | chr25:12092988-12092831 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 558-804 |
| Cow position: | chr25:16143886-16144136 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 22, 102 |
| Conread position: | 558-806 |
| Cow position: | chr25:31537042-31537296 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 75, 48 |
| Conread position: | 558-813 |
| Cow position: | chr25:21158094-21157840 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 73, 151 |
| Conread position: | 558-827 |
| Cow position: | chr25:13847167-13847440 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 72, 97 |
| Conread position: | 558-917 |
| Cow position: | chr25:12409420-12409043 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 109 |
| Conread position: | 560-710 |
| Cow position: | chr25:9835835-9835980 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 567-813 |
| Cow position: | chr25:8547772-8547521 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 24, 190 |
| Conread position: | 591-865 |
| Cow position: | chr25:18563646-18563369 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 8, 180 |
| Conread position: | 593-728 |
| Cow position: | chr25:23205657-23205517 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 593-921 |
| Cow position: | chr25:11408727-11409066 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 22, 37 |
| Conread position: | 595-918 |
| Cow position: | chr25:15661972-15662297 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 229 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 41, 160 |
| Conread position: | 595-923 |
| Cow position: | chr25:40632437-40632111 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 64 |
| Conread position: | 597-922 |
| Cow position: | chr25:16116856-16117191 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 25 |
| Conread position: | 655-921 |
| Cow position: | chr25:7053147-7052889 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 80, 35 |
| Conread position: | 731-920 |
| Cow position: | chr25:9835982-9836176 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 77, 20 |
| Conread position: | 751-924 |
| Cow position: | chr25:10473809-10473985 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 59, 156 |
| Conread position: | 754-924 |
| Cow position: | chr25:8543839-8544002 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 110, 25 |
| Conread position: | 759-908 |
| Cow position: | chr25:10291988-10292145 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 49, 131 |
| Conread position: | 759-917 |
| Cow position: | chr25:9318-9153 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 759-923 |
| Cow position: | chr25:11433914-11433746 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 52, 139 |
| Conread position: | 759-924 |
| Cow position: | chr25:7493631-7493465 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 52, 83 |
| Conread position: | 761-921 |
| Cow position: | chr25:14556233-14556401 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 47, 141 |
| Conread position: | 762-916 |
| Cow position: | chr25:15456381-15456218 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 762-918 |
| Cow position: | chr25:12254732-12254569 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 762-918 |
| Cow position: | chr25:15656368-15656531 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 762-921 |
| Cow position: | chr25:7663889-7664040 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 49, 66 |
| Conread position: | 762-921 |
| Cow position: | chr25:36035036-36035199 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 762-923 |
| Cow position: | chr25:22157548-22157710 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 46, 71 |
| Conread position: | 768-923 |
| Cow position: | chr25:36818585-36818423 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 768-924 |
| Cow position: | chr25:6130778-6130936 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 65, 26 |
Show alignments to all cow chromosomes.