Cow genome map
| Conread name: | Ss1.1-raor015_j22.5 |
| Conread position: | 552-905 |
| Cow position: | chr9:61140180-61139819 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 7 |
| Conread position: | 557-922 |
| Cow position: | chr9:11424916-11425280 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 249 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 76, 103 |
| Conread position: | 558-813 |
| Cow position: | chr9:3380431-3380696 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 16, 157 |
| Conread position: | 558-850 |
| Cow position: | chr9:17938099-17938393 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 29 |
| Conread position: | 558-875 |
| Cow position: | chr9:51768122-51767799 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 34, 16 |
| Conread position: | 559-921 |
| Cow position: | chr9:48070632-48070240 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 277 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 74, 206 |
| Conread position: | 560-922 |
| Cow position: | chr9:53332365-53332736 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 93 |
| Conread position: | 560-924 |
| Cow position: | chr9:61446145-61445770 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 192 |
| Conread position: | 567-924 |
| Cow position: | chr9:30110888-30111252 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 97 |
| Conread position: | 585-865 |
| Cow position: | chr9:7148364-7148079 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 50, 164 |
| Conread position: | 597-811 |
| Cow position: | chr9:1870479-1870695 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 36, 62 |
| Conread position: | 630-923 |
| Cow position: | chr9:61312446-61312740 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 25 |
| Conread position: | 741-887 |
| Cow position: | chr9:21900096-21900250 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 759-920 |
| Cow position: | chr9:1020622-1020789 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 53, 136 |
| Conread position: | 759-921 |
| Cow position: | chr9:10290554-10290383 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 759-921 |
| Cow position: | chr9:25574374-25574535 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 49, 70 |
| Conread position: | 759-921 |
| Cow position: | chr9:51279660-51279828 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 47, 141 |
| Conread position: | 759-922 |
| Cow position: | chr9:36425895-36426065 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 761-921 |
| Cow position: | chr9:46090830-46090659 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 47, 144 |
| Conread position: | 762-906 |
| Cow position: | chr9:26525530-26525681 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 762-921 |
| Cow position: | chr9:21499917-21499756 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 20, 74 |
| Conread position: | 762-921 |
| Cow position: | chr9:56082861-56082693 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 46, 0 |
Show alignments to all cow chromosomes.