Cow genome map
| Conread name: | Ss1.1-rdbla0108_i21.5 |
| Conread position: | 97-362 |
| Cow position: | chr10:25479004-25479267 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 12, 160 |
| Conread position: | 99-347 |
| Cow position: | chr10:15391394-15391652 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 10, 18 |
| Conread position: | 101-307 |
| Cow position: | chr10:38429637-38429427 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 33, 9 |
| Conread position: | 103-324 |
| Cow position: | chr10:11032584-11032359 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 29, 13 |
| Conread position: | 103-335 |
| Cow position: | chr10:45606513-45606283 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 99, 13 |
| Conread position: | 103-361 |
| Cow position: | chr10:66753149-66753421 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 30, 13 |
| Conread position: | 104-338 |
| Cow position: | chr10:23404112-23404352 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 30, 12 |
| Conread position: | 105-346 |
| Cow position: | chr10:20110030-20109790 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 26, 11 |
| Conread position: | 106-335 |
| Cow position: | chr10:22479811-22479576 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 28, 13 |
| Conread position: | 111-354 |
| Cow position: | chr10:11404219-11403970 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 22, 50 |
| Conread position: | 112-284 |
| Cow position: | chr10:21424758-21424579 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 112-319 |
| Cow position: | chr10:15874157-15873942 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 31, 69 |
| Conread position: | 112-324 |
| Cow position: | chr10:48255305-48255084 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 76, 29 |
| Conread position: | 112-324 |
| Cow position: | chr10:51221146-51220937 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 25, 138 |
| Conread position: | 112-324 |
| Cow position: | chr10:59153734-59153523 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 22, 50 |
| Conread position: | 112-335 |
| Cow position: | chr10:10124262-10124494 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 112-335 |
| Cow position: | chr10:24786024-24786259 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 22, 131 |
| Conread position: | 112-335 |
| Cow position: | chr10:41984970-41984736 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 112-339 |
| Cow position: | chr10:58608028-58608257 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 81, 15 |
| Conread position: | 112-345 |
| Cow position: | chr10:6012118-6011891 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 25, 54 |
| Conread position: | 112-348 |
| Cow position: | chr10:8413132-8412890 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 25, 40 |
| Conread position: | 112-360 |
| Cow position: | chr10:6038418-6038171 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 25, 107 |
| Conread position: | 112-387 |
| Cow position: | chr10:49624683-49624967 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 21, 249 |
| Conread position: | 115-322 |
| Cow position: | chr10:2407210-2406995 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 23, 46 |
| Conread position: | 115-324 |
| Cow position: | chr10:11497159-11497361 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 29, 75 |
| Conread position: | 115-346 |
| Cow position: | chr10:23949000-23948757 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 115-347 |
| Cow position: | chr10:39081319-39081556 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 26, 41 |
| Conread position: | 115-410 |
| Cow position: | chr10:62516802-62517106 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 208 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 25, 234 |
| Conread position: | 117-347 |
| Cow position: | chr10:42454052-42454282 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 118-307 |
| Cow position: | chr10:31368810-31368610 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 14, 180 |
| Conread position: | 130-329 |
| Cow position: | chr10:9794720-9794518 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 72, 13 |
| Conread position: | 131-307 |
| Cow position: | chr10:6490827-6490641 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 13, 30 |
| Conread position: | 131-338 |
| Cow position: | chr10:50776646-50776859 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 20, 29 |
| Conread position: | 132-360 |
| Cow position: | chr10:3115419-3115660 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 22, 157 |
| Conread position: | 132-397 |
| Cow position: | chr10:9530044-9529783 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 65, 50 |
| Conread position: | 135-319 |
| Cow position: | chr10:31250790-31250606 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 137-358 |
| Cow position: | chr10:68251761-68251985 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 19, 7 |
| Conread position: | 138-332 |
| Cow position: | chr10:53762171-53761970 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 10, 111 |
| Conread position: | 138-339 |
| Cow position: | chr10:34167833-34168027 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 50, 12 |
| Conread position: | 140-335 |
| Cow position: | chr10:29689385-29689182 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 57, 149 |
| Conread position: | 141-370 |
| Cow position: | chr10:52244700-52244460 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 6, 27 |
| Conread position: | 143-352 |
| Cow position: | chr10:907912-908118 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 51, 7 |
| Conread position: | 151-307 |
| Cow position: | chr10:30753144-30753296 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 159-312 |
| Cow position: | chr10:6921690-6921846 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 41, 98 |
| Conread position: | 160-335 |
| Cow position: | chr10:20952113-20952281 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 191-310 |
| Cow position: | chr10:2267039-2266921 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 191-338 |
| Cow position: | chr10:52889228-52889084 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 191-340 |
| Cow position: | chr10:45299818-45299963 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 196-319 |
| Cow position: | chr10:61426723-61426600 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.