Cow genome map
| Conread name: | Ss1.1-rdbla0108_i21.5 |
| Conread position: | 57-315 |
| Cow position: | chr11:84795879-84795612 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 12, 25 |
| Conread position: | 77-335 |
| Cow position: | chr11:9055852-9056114 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 57, 31 |
| Conread position: | 95-299 |
| Cow position: | chr11:56892725-56892939 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 14, 177 |
| Conread position: | 99-299 |
| Cow position: | chr11:60137607-60137811 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 35, 11 |
| Conread position: | 106-315 |
| Cow position: | chr11:24967374-24967579 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 28, 10 |
| Conread position: | 106-324 |
| Cow position: | chr11:47566020-47565791 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 28, 10 |
| Conread position: | 106-338 |
| Cow position: | chr11:11752598-11752356 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 27, 10 |
| Conread position: | 106-358 |
| Cow position: | chr11:4609913-4609669 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 91, 10 |
| Conread position: | 110-291 |
| Cow position: | chr11:2908693-2908879 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 34, 7 |
| Conread position: | 110-334 |
| Cow position: | chr11:27681422-27681657 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 22, 7 |
| Conread position: | 111-345 |
| Cow position: | chr11:19238232-19238000 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 34, 42 |
| Conread position: | 112-307 |
| Cow position: | chr11:66401626-66401819 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 25, 34 |
| Conread position: | 112-335 |
| Cow position: | chr11:19259590-19259355 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 22, 42 |
| Conread position: | 112-335 |
| Cow position: | chr11:34946148-34945914 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 22, 152 |
| Conread position: | 112-335 |
| Cow position: | chr11:51745280-51745500 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 22, 32 |
| Conread position: | 112-337 |
| Cow position: | chr11:50951479-50951714 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 19, 144 |
| Conread position: | 112-338 |
| Cow position: | chr11:11460416-11460632 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 36, 17 |
| Conread position: | 112-348 |
| Cow position: | chr11:78543860-78544100 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 22, 195 |
| Conread position: | 112-359 |
| Cow position: | chr11:42519664-42519913 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 22, 34 |
| Conread position: | 112-360 |
| Cow position: | chr11:16000852-16001105 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 21, 149 |
| Conread position: | 112-361 |
| Cow position: | chr11:45889889-45890143 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 88, 39 |
| Conread position: | 112-380 |
| Cow position: | chr11:9874244-9874515 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 22, 10 |
| Conread position: | 115-322 |
| Cow position: | chr11:31894202-31894416 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 115-333 |
| Cow position: | chr11:48983051-48983269 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 22, 53 |
| Conread position: | 115-335 |
| Cow position: | chr11:52832789-52832569 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 17, 36 |
| Conread position: | 115-382 |
| Cow position: | chr11:63508354-63508616 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 19, 37 |
| Conread position: | 116-299 |
| Cow position: | chr11:81518246-81518055 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 116-324 |
| Cow position: | chr11:53452419-53452203 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 116-329 |
| Cow position: | chr11:7683893-7684108 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 18, 77 |
| Conread position: | 124-338 |
| Cow position: | chr11:17151614-17151831 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 60, 26 |
| Conread position: | 127-363 |
| Cow position: | chr11:5648683-5648924 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 10, 132 |
| Conread position: | 131-299 |
| Cow position: | chr11:72082651-72082825 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 16, 124 |
| Conread position: | 131-324 |
| Cow position: | chr11:46705594-46705393 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 16, 53 |
| Conread position: | 131-335 |
| Cow position: | chr11:8828685-8828475 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 131-335 |
| Cow position: | chr11:11785275-11785490 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 131-335 |
| Cow position: | chr11:32439009-32438795 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 17, 131 |
| Conread position: | 131-337 |
| Cow position: | chr11:7001989-7001770 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 131-343 |
| Cow position: | chr11:12950001-12949784 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 12, 118 |
| Conread position: | 132-307 |
| Cow position: | chr11:39808938-39809117 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 9, 19 |
| Conread position: | 132-386 |
| Cow position: | chr11:50937801-50937534 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 17, 42 |
| Conread position: | 134-311 |
| Cow position: | chr11:65988173-65988357 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 136-324 |
| Cow position: | chr11:47193462-47193660 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 139-352 |
| Cow position: | chr11:19269130-19268916 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 201, 0 |
| Conread position: | 140-347 |
| Cow position: | chr11:29802634-29802425 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 7, 101 |
| Conread position: | 141-320 |
| Cow position: | chr11:73499235-73499060 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 56, 10 |
| Conread position: | 141-324 |
| Cow position: | chr11:17452192-17452380 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 56, 9 |
| Conread position: | 141-352 |
| Cow position: | chr11:70399806-70400015 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 72, 9 |
| Conread position: | 142-376 |
| Cow position: | chr11:40275645-40275408 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 55, 17 |
| Conread position: | 142-376 |
| Cow position: | chr11:40279137-40278900 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 55, 17 |
| Conread position: | 144-311 |
| Cow position: | chr11:13039214-13039047 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 53, 18 |
| Conread position: | 149-347 |
| Cow position: | chr11:14046114-14045910 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 51, 82 |
| Conread position: | 154-388 |
| Cow position: | chr11:34642263-34642024 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 7, 177 |
| Conread position: | 155-324 |
| Cow position: | chr11:19606286-19606458 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 42, 93 |
| Conread position: | 186-358 |
| Cow position: | chr11:54057999-54058170 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 191-319 |
| Cow position: | chr11:373131-373003 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 191-324 |
| Cow position: | chr11:46700024-46700155 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 70, 62 |
| Conread position: | 191-344 |
| Cow position: | chr11:75255418-75255566 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 70, 62 |
| Conread position: | 191-360 |
| Cow position: | chr11:5188142-5188308 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 192-335 |
| Cow position: | chr11:34136516-34136659 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 193-335 |
| Cow position: | chr11:6729683-6729825 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 197-365 |
| Cow position: | chr11:7333092-7332921 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 72 |
| Conread position: | 201-322 |
| Cow position: | chr11:76007403-76007523 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 60, 6 |
| Conread position: | 206-335 |
| Cow position: | chr11:76851808-76851680 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 6, 0 |
Show alignments to all cow chromosomes.