Cow genome map
| Conread name: | Ss1.1-rdbla0108_i21.5 |
| Conread position: | 99-332 |
| Cow position: | chr13:38898188-38898432 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 103-324 |
| Cow position: | chr13:20180466-20180237 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 38, 13 |
| Conread position: | 105-346 |
| Cow position: | chr13:32167265-32167511 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 33, 11 |
| Conread position: | 110-355 |
| Cow position: | chr13:22886951-22887199 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 24, 36 |
| Conread position: | 112-291 |
| Cow position: | chr13:3016136-3016319 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 14, 28 |
| Conread position: | 112-291 |
| Cow position: | chr13:33954987-33955171 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 22, 39 |
| Conread position: | 112-299 |
| Cow position: | chr13:35719096-35719291 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 112-324 |
| Cow position: | chr13:58348124-58347907 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 25, 58 |
| Conread position: | 112-332 |
| Cow position: | chr13:14717293-14717525 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 16, 175 |
| Conread position: | 112-338 |
| Cow position: | chr13:661599-661829 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 20, 30 |
| Conread position: | 112-348 |
| Cow position: | chr13:46430260-46430506 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 22, 167 |
| Conread position: | 112-352 |
| Cow position: | chr13:9803112-9802862 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 22, 200 |
| Conread position: | 112-358 |
| Cow position: | chr13:46284572-46284820 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 20, 42 |
| Conread position: | 112-358 |
| Cow position: | chr13:49200679-49200430 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 22, 121 |
| Conread position: | 112-384 |
| Cow position: | chr13:37558324-37558046 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 13, 146 |
| Conread position: | 112-440 |
| Cow position: | chr13:50739208-50738884 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 22, 39 |
| Conread position: | 115-281 |
| Cow position: | chr13:54080772-54080950 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 115-324 |
| Cow position: | chr13:33282045-33281827 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 115-365 |
| Cow position: | chr13:34761719-34761465 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 22, 135 |
| Conread position: | 116-312 |
| Cow position: | chr13:9125706-9125504 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 38 |
| Conread position: | 116-324 |
| Cow position: | chr13:18761693-18761907 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 21, 106 |
| Conread position: | 116-347 |
| Cow position: | chr13:22075711-22075469 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 117-315 |
| Cow position: | chr13:33347165-33346966 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 16, 86 |
| Conread position: | 125-306 |
| Cow position: | chr13:7010495-7010312 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 72, 16 |
| Conread position: | 130-359 |
| Cow position: | chr13:58620925-58621156 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 38, 15 |
| Conread position: | 131-335 |
| Cow position: | chr13:32657403-32657181 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 14, 29 |
| Conread position: | 132-351 |
| Cow position: | chr13:15090888-15091111 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 68, 97 |
| Conread position: | 132-354 |
| Cow position: | chr13:12745694-12745467 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 65, 114 |
| Conread position: | 132-360 |
| Cow position: | chr13:30271341-30271110 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 7, 20 |
| Conread position: | 132-363 |
| Cow position: | chr13:26522928-26523154 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 133-307 |
| Cow position: | chr13:11834457-11834639 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 15, 44 |
| Conread position: | 133-312 |
| Cow position: | chr13:16327684-16327504 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 15, 143 |
| Conread position: | 133-324 |
| Cow position: | chr13:20156507-20156308 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 133-324 |
| Cow position: | chr13:54969781-54969984 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 14, 143 |
| Conread position: | 133-329 |
| Cow position: | chr13:30510077-30509882 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 69, 17 |
| Conread position: | 133-339 |
| Cow position: | chr13:12521758-12521972 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 64, 17 |
| Conread position: | 133-346 |
| Cow position: | chr13:43167011-43167232 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 140-362 |
| Cow position: | chr13:17796381-17796150 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 52, 10 |
| Conread position: | 141-304 |
| Cow position: | chr13:14099103-14099271 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 56, 9 |
| Conread position: | 141-346 |
| Cow position: | chr13:54814901-54815114 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 142-346 |
| Cow position: | chr13:43155843-43156056 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 142-360 |
| Cow position: | chr13:32904790-32904566 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 58, 9 |
| Conread position: | 143-324 |
| Cow position: | chr13:18551012-18550826 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 52, 115 |
| Conread position: | 146-324 |
| Cow position: | chr13:29820199-29820385 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 49, 5 |
| Conread position: | 146-347 |
| Cow position: | chr13:26508488-26508285 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 43, 174 |
| Conread position: | 161-307 |
| Cow position: | chr13:22082379-22082228 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 166-357 |
| Cow position: | chr13:17991643-17991447 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 177-321 |
| Cow position: | chr13:26507901-26507759 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 191-312 |
| Cow position: | chr13:25058109-25057988 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 191-346 |
| Cow position: | chr13:6927257-6927106 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 191-354 |
| Cow position: | chr13:34191760-34191922 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 191-357 |
| Cow position: | chr13:33161041-33161205 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 191-362 |
| Cow position: | chr13:58615142-58614973 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 191-381 |
| Cow position: | chr13:37435272-37435088 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 196-333 |
| Cow position: | chr13:34689881-34689744 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 66, 57 |
| Conread position: | 197-324 |
| Cow position: | chr13:13296112-13296235 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 199-338 |
| Cow position: | chr13:53858115-53858254 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.