Cow genome map
| Conread name: | Ss1.1-rdbla0108_i21.5 |
| Conread position: | 78-339 |
| Cow position: | chr15:23109103-23109373 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 119, 184 |
| Conread position: | 102-341 |
| Cow position: | chr15:24864111-24864355 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 11, 52 |
| Conread position: | 103-347 |
| Cow position: | chr15:8937164-8936940 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 105-335 |
| Cow position: | chr15:6749695-6749931 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 29, 11 |
| Conread position: | 105-335 |
| Cow position: | chr15:19725567-19725795 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 8, 26 |
| Conread position: | 105-356 |
| Cow position: | chr15:24411566-24411313 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 97, 6 |
| Conread position: | 106-360 |
| Cow position: | chr15:15215171-15214905 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 20, 10 |
| Conread position: | 107-324 |
| Cow position: | chr15:21836832-21836614 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 27, 9 |
| Conread position: | 110-307 |
| Cow position: | chr15:3572554-3572757 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 24, 7 |
| Conread position: | 111-335 |
| Cow position: | chr15:12163371-12163605 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 21, 152 |
| Conread position: | 111-335 |
| Cow position: | chr15:24977031-24977259 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 23, 56 |
| Conread position: | 111-338 |
| Cow position: | chr15:8022199-8021967 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 22, 202 |
| Conread position: | 112-285 |
| Cow position: | chr15:36839027-36839209 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 112-312 |
| Cow position: | chr15:19812796-19812596 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 22, 155 |
| Conread position: | 112-346 |
| Cow position: | chr15:35967343-35967581 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 87, 22 |
| Conread position: | 112-368 |
| Cow position: | chr15:22886696-22886438 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 25, 82 |
| Conread position: | 112-412 |
| Cow position: | chr15:47821522-47821214 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 215 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 26, 57 |
| Conread position: | 115-307 |
| Cow position: | chr15:22854547-22854351 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 22, 39 |
| Conread position: | 115-346 |
| Cow position: | chr15:27863181-27863423 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 116-306 |
| Cow position: | chr15:26421457-26421656 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 116-316 |
| Cow position: | chr15:9178066-9178267 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 84, 29 |
| Conread position: | 125-272 |
| Cow position: | chr15:46005517-46005671 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 127-324 |
| Cow position: | chr15:11957669-11957464 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 63, 32 |
| Conread position: | 130-346 |
| Cow position: | chr15:26933820-26934045 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 11, 31 |
| Conread position: | 131-335 |
| Cow position: | chr15:17788232-17788025 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 58, 22 |
| Conread position: | 131-338 |
| Cow position: | chr15:34255600-34255807 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 17, 118 |
| Conread position: | 131-354 |
| Cow position: | chr15:50561271-50561505 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 8, 21 |
| Conread position: | 132-324 |
| Cow position: | chr15:31616880-31617081 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 134-278 |
| Cow position: | chr15:31182552-31182403 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 11, 124 |
| Conread position: | 141-307 |
| Cow position: | chr15:10698454-10698609 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 141-324 |
| Cow position: | chr15:10303340-10303147 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 141-338 |
| Cow position: | chr15:39200894-39200695 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 10 |
| Conread position: | 147-279 |
| Cow position: | chr15:23140021-23140154 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 50, 109 |
| Conread position: | 150-310 |
| Cow position: | chr15:34037082-34037252 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 154-335 |
| Cow position: | chr15:10569005-10569191 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 44, 155 |
| Conread position: | 161-378 |
| Cow position: | chr15:4216049-4216272 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 36, 86 |
| Conread position: | 162-360 |
| Cow position: | chr15:23547897-23548095 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 35, 149 |
| Conread position: | 175-359 |
| Cow position: | chr15:10189442-10189255 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 22, 104 |
| Conread position: | 191-339 |
| Cow position: | chr15:37918704-37918556 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 192-362 |
| Cow position: | chr15:2117941-2117774 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 79, 0 |
Show alignments to all cow chromosomes.