Cow genome map
| Conread name: | Ss1.1-rdbla0108_i21.5 |
| Conread position: | 97-324 |
| Cow position: | chr16:43082305-43082077 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 13 |
| Conread position: | 103-354 |
| Cow position: | chr16:54515659-54515913 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 38, 13 |
| Conread position: | 103-362 |
| Cow position: | chr16:18427121-18427380 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 31, 13 |
| Conread position: | 104-312 |
| Cow position: | chr16:4499371-4499576 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 30, 12 |
| Conread position: | 104-420 |
| Cow position: | chr16:16946603-16946270 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 29, 12 |
| Conread position: | 106-291 |
| Cow position: | chr16:19976913-19977095 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 87, 10 |
| Conread position: | 106-310 |
| Cow position: | chr16:10303810-10303600 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 28, 10 |
| Conread position: | 106-324 |
| Cow position: | chr16:28827241-28827013 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 28, 10 |
| Conread position: | 108-284 |
| Cow position: | chr16:56104975-56104789 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 25, 154 |
| Conread position: | 110-347 |
| Cow position: | chr16:18557322-18557076 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 16, 7 |
| Conread position: | 112-292 |
| Cow position: | chr16:44898808-44898623 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 22, 138 |
| Conread position: | 112-322 |
| Cow position: | chr16:15938585-15938369 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 20, 39 |
| Conread position: | 112-323 |
| Cow position: | chr16:19003147-19002928 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 112-324 |
| Cow position: | chr16:26156194-26155978 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 26, 137 |
| Conread position: | 112-346 |
| Cow position: | chr16:38620900-38621141 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 21, 34 |
| Conread position: | 115-358 |
| Cow position: | chr16:1440383-1440625 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 19, 116 |
| Conread position: | 116-335 |
| Cow position: | chr16:30639282-30639500 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 18, 49 |
| Conread position: | 117-300 |
| Cow position: | chr16:47368707-47368898 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 20, 54 |
| Conread position: | 130-324 |
| Cow position: | chr16:47909381-47909178 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 67, 20 |
| Conread position: | 131-298 |
| Cow position: | chr16:5333625-5333456 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 16, 118 |
| Conread position: | 131-329 |
| Cow position: | chr16:23066623-23066824 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 16, 68 |
| Conread position: | 131-336 |
| Cow position: | chr16:42312348-42312560 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 16, 29 |
| Conread position: | 132-335 |
| Cow position: | chr16:45693112-45693318 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 135-366 |
| Cow position: | chr16:33121577-33121810 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 6, 16 |
| Conread position: | 143-348 |
| Cow position: | chr16:2619004-2618799 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 162 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 57, 7 |
| Conread position: | 155-310 |
| Cow position: | chr16:28267036-28266882 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 10 |
| Conread position: | 162-340 |
| Cow position: | chr16:31490313-31490495 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 35, 90 |
| Conread position: | 171-362 |
| Cow position: | chr16:29094875-29095059 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 95, 29 |
| Conread position: | 175-333 |
| Cow position: | chr16:9407868-9407705 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 186-410 |
| Cow position: | chr16:31222564-31222778 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 191-312 |
| Cow position: | chr16:23978402-23978281 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 191-353 |
| Cow position: | chr16:228464-228305 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 195-346 |
| Cow position: | chr16:4708866-4708715 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 197-331 |
| Cow position: | chr16:52565457-52565590 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 199-346 |
| Cow position: | chr16:49122226-49122080 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 75, 0 |
Show alignments to all cow chromosomes.