Cow genome map
| Conread name: | Ss1.1-rdbla0108_i21.5 |
| Conread position: | 70-324 |
| Cow position: | chr17:24880682-24880944 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 39, 48 |
| Conread position: | 76-347 |
| Cow position: | chr17:23147368-23147645 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 31, 59 |
| Conread position: | 103-335 |
| Cow position: | chr17:38139481-38139723 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 31, 14 |
| Conread position: | 104-348 |
| Cow position: | chr17:3042450-3042704 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 30, 13 |
| Conread position: | 105-305 |
| Cow position: | chr17:19891598-19891809 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 29, 11 |
| Conread position: | 106-299 |
| Cow position: | chr17:10271474-10271670 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 41, 10 |
| Conread position: | 106-362 |
| Cow position: | chr17:32457590-32457331 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 26, 10 |
| Conread position: | 110-352 |
| Cow position: | chr17:39012708-39012953 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 84, 7 |
| Conread position: | 111-298 |
| Cow position: | chr17:8926232-8926039 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 6 |
| Conread position: | 111-378 |
| Cow position: | chr17:20216149-20216421 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 27, 233 |
| Conread position: | 112-276 |
| Cow position: | chr17:10308044-10307877 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 84, 38 |
| Conread position: | 112-285 |
| Cow position: | chr17:25707940-25708121 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 22, 149 |
| Conread position: | 112-324 |
| Cow position: | chr17:27257248-27257014 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 112-324 |
| Cow position: | chr17:35212350-35212560 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 27, 91 |
| Conread position: | 112-324 |
| Cow position: | chr17:36217198-36216982 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 16, 47 |
| Conread position: | 112-325 |
| Cow position: | chr17:1455956-1455739 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 21, 148 |
| Conread position: | 112-335 |
| Cow position: | chr17:33903938-33903709 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 20, 114 |
| Conread position: | 112-365 |
| Cow position: | chr17:8832142-8831898 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 37, 22 |
| Conread position: | 115-338 |
| Cow position: | chr17:37778633-37778417 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 32, 48 |
| Conread position: | 116-354 |
| Cow position: | chr17:18173833-18173597 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 18, 87 |
| Conread position: | 117-335 |
| Cow position: | chr17:31798463-31798234 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 16, 145 |
| Conread position: | 123-303 |
| Cow position: | chr17:10790304-10790478 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 63, 20 |
| Conread position: | 126-324 |
| Cow position: | chr17:144179-143976 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 7, 30 |
| Conread position: | 131-339 |
| Cow position: | chr17:13229379-13229596 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 12, 39 |
| Conread position: | 131-342 |
| Cow position: | chr17:37138763-37138975 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 12, 122 |
| Conread position: | 131-355 |
| Cow position: | chr17:2271000-2271231 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 17, 151 |
| Conread position: | 131-360 |
| Cow position: | chr17:6570136-6569910 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 13, 125 |
| Conread position: | 131-374 |
| Cow position: | chr17:9748748-9748999 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 14, 194 |
| Conread position: | 135-347 |
| Cow position: | chr17:33386427-33386648 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 62, 146 |
| Conread position: | 141-307 |
| Cow position: | chr17:7595168-7595337 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 53, 9 |
| Conread position: | 141-347 |
| Cow position: | chr17:30236210-30236418 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 23, 9 |
| Conread position: | 143-335 |
| Cow position: | chr17:14278077-14278278 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 56, 7 |
| Conread position: | 144-331 |
| Cow position: | chr17:23318300-23318111 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 49, 7 |
| Conread position: | 154-335 |
| Cow position: | chr17:15922867-15923052 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 125 |
| Conread position: | 183-363 |
| Cow position: | chr17:42775206-42775025 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 191-309 |
| Cow position: | chr17:23879455-23879337 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 191-314 |
| Cow position: | chr17:27781137-27781260 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 191-318 |
| Cow position: | chr17:33930230-33930357 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 70, 62 |
| Conread position: | 191-335 |
| Cow position: | chr17:8093918-8094056 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 196-362 |
| Cow position: | chr17:7861626-7861460 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 197-322 |
| Cow position: | chr17:11826380-11826255 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 219-354 |
| Cow position: | chr17:37342193-37342060 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 119 |
Show alignments to all cow chromosomes.