Cow genome map
| Conread name: | Ss1.1-rdbla0108_i21.5 |
| Conread position: | 2-119 |
| Cow position: | chr8:26042139-26042021 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 42, 102 |
| Conread position: | 94-307 |
| Cow position: | chr8:48763490-48763703 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 19, 41 |
| Conread position: | 95-380 |
| Cow position: | chr8:5997823-5997542 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 97-335 |
| Cow position: | chr8:53866045-53866286 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 183 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 12, 66 |
| Conread position: | 103-317 |
| Cow position: | chr8:57387880-57388101 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 31, 13 |
| Conread position: | 105-310 |
| Cow position: | chr8:29413837-29414053 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 28, 6 |
| Conread position: | 106-339 |
| Cow position: | chr8:37487353-37487108 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 106-360 |
| Cow position: | chr8:35218318-35218574 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 94, 10 |
| Conread position: | 108-324 |
| Cow position: | chr8:18001299-18001093 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 110-307 |
| Cow position: | chr8:34318124-34317914 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 23, 7 |
| Conread position: | 110-340 |
| Cow position: | chr8:6723850-6723620 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 26, 7 |
| Conread position: | 110-345 |
| Cow position: | chr8:11249525-11249289 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 24, 7 |
| Conread position: | 112-315 |
| Cow position: | chr8:27053646-27053437 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 27, 114 |
| Conread position: | 112-323 |
| Cow position: | chr8:9811751-9811974 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 112-324 |
| Cow position: | chr8:26922573-26922795 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 22, 175 |
| Conread position: | 112-324 |
| Cow position: | chr8:46203220-46203440 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 17, 48 |
| Conread position: | 112-328 |
| Cow position: | chr8:7671305-7671518 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 22, 44 |
| Conread position: | 112-331 |
| Cow position: | chr8:29935867-29936099 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 22, 46 |
| Conread position: | 112-336 |
| Cow position: | chr8:13975845-13976076 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 22, 170 |
| Conread position: | 112-345 |
| Cow position: | chr8:27294679-27294920 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 22, 207 |
| Conread position: | 112-347 |
| Cow position: | chr8:28221611-28221371 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 21, 148 |
| Conread position: | 112-361 |
| Cow position: | chr8:25075548-25075807 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 20, 153 |
| Conread position: | 112-365 |
| Cow position: | chr8:20052968-20052705 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 24, 50 |
| Conread position: | 115-324 |
| Cow position: | chr8:55829393-55829174 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 19, 124 |
| Conread position: | 115-330 |
| Cow position: | chr8:13810158-13810382 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 23, 56 |
| Conread position: | 115-335 |
| Cow position: | chr8:20682354-20682583 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 77, 24 |
| Conread position: | 115-349 |
| Cow position: | chr8:49265350-49265107 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 18, 192 |
| Conread position: | 116-394 |
| Cow position: | chr8:6469209-6468925 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 12, 35 |
| Conread position: | 117-355 |
| Cow position: | chr8:31690764-31691009 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 17, 165 |
| Conread position: | 118-360 |
| Cow position: | chr8:51905084-51904827 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 16, 163 |
| Conread position: | 122-323 |
| Cow position: | chr8:8902013-8901813 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 75, 28 |
| Conread position: | 123-359 |
| Cow position: | chr8:36505345-36505585 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 74, 27 |
| Conread position: | 124-329 |
| Cow position: | chr8:31815077-31814864 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 75, 26 |
| Conread position: | 131-324 |
| Cow position: | chr8:43693184-43693382 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 17, 164 |
| Conread position: | 131-335 |
| Cow position: | chr8:26451094-26451309 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 17, 32 |
| Conread position: | 131-360 |
| Cow position: | chr8:55305052-55305289 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 17, 30 |
| Conread position: | 132-382 |
| Cow position: | chr8:942788-943037 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 65, 39 |
| Conread position: | 138-347 |
| Cow position: | chr8:17064105-17063894 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 11, 187 |
| Conread position: | 138-348 |
| Cow position: | chr8:15969579-15969368 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 92, 16 |
| Conread position: | 140-336 |
| Cow position: | chr8:24426637-24426840 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 57, 10 |
| Conread position: | 140-338 |
| Cow position: | chr8:39017686-39017893 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 141-312 |
| Cow position: | chr8:45586435-45586261 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 56, 9 |
| Conread position: | 141-324 |
| Cow position: | chr8:8134516-8134328 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 59, 10 |
| Conread position: | 141-331 |
| Cow position: | chr8:25573026-25573222 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 56, 27 |
| Conread position: | 142-347 |
| Cow position: | chr8:41318025-41318233 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 55, 8 |
| Conread position: | 143-340 |
| Cow position: | chr8:43803536-43803742 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 54, 7 |
| Conread position: | 154-319 |
| Cow position: | chr8:46640336-46640168 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 35, 9 |
| Conread position: | 157-324 |
| Cow position: | chr8:37114907-37114739 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 43, 9 |
| Conread position: | 159-313 |
| Cow position: | chr8:6330682-6330841 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 160-319 |
| Cow position: | chr8:32079677-32079515 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 37, 151 |
| Conread position: | 166-338 |
| Cow position: | chr8:24547027-24547204 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 171-322 |
| Cow position: | chr8:36471557-36471712 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 26, 87 |
| Conread position: | 171-340 |
| Cow position: | chr8:13900414-13900590 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 191-365 |
| Cow position: | chr8:13738554-13738725 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 162, 13 |
| Conread position: | 193-324 |
| Cow position: | chr8:39936665-39936795 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 193-335 |
| Cow position: | chr8:18743539-18743678 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 235-827 |
| Cow position: | chr8:26041886-26041298 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 58 |
| Conread position: | 856-1080 |
| Cow position: | chr8:26041293-26041081 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 218, 40 |
Show alignments to all cow chromosomes.