Cow genome map

Conread name: Ss1.1-rdbla0108_i21.5

Conread position: 63-347
Cow position: chr9:46252951-46252665 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 198
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 37, 86

Conread position: 76-322
Cow position: chr9:27292155-27292409 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 176
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 58, 35

Conread position: 99-322
Cow position: chr9:15006652-15006879 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 178
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 35, 11

Conread position: 99-359
Cow position: chr9:19382428-19382162 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 189
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 10, 18

Conread position: 100-335
Cow position: chr9:4538760-4539004 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 171
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 25, 11

Conread position: 101-318
Cow position: chr9:32847983-32847761 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 163
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 33, 10

Conread position: 101-337
Cow position: chr9:16118822-16118588 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 177
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 33, 9

Conread position: 103-338
Cow position: chr9:32817044-32817289 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 174
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 31, 13

Conread position: 104-345
Cow position: chr9:54206230-54206484 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 183
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 33, 13

Conread position: 106-380
Cow position: chr9:34725419-34725697 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 197
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 27, 11

Conread position: 109-324
Cow position: chr9:40007947-40007728 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 158
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 25, 8

Conread position: 110-324
Cow position: chr9:56861095-56860882 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 158
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 27, 7

Conread position: 110-329
Cow position: chr9:8657344-8657570 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 165
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 6, 36

Conread position: 111-338
Cow position: chr9:6203704-6203933 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 158
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 37, 199

Conread position: 112-310
Cow position: chr9:41957892-41957686 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 146
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 22, 0

Conread position: 112-335
Cow position: chr9:32266310-32266531 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 156
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 65, 19

Conread position: 112-337
Cow position: chr9:14184751-14184523 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 171
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 22, 149

Conread position: 112-337
Cow position: chr9:50522263-50522483 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 165
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 85, 50

Conread position: 112-338
Cow position: chr9:17110858-17110625 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 174
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 22, 73

Conread position: 112-338
Cow position: chr9:34310113-34309880 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 172
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 22, 50

Conread position: 112-339
Cow position: chr9:34204218-34203980 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 171
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 22, 0

Conread position: 112-357
Cow position: chr9:10127586-10127833 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 172
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 22, 56

Conread position: 112-359
Cow position: chr9:20039048-20039298 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 180
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 22, 5

Conread position: 115-324
Cow position: chr9:15033989-15033774 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 160
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 19, 102

Conread position: 115-324
Cow position: chr9:48773430-48773219 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 153
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 74, 16

Conread position: 116-304
Cow position: chr9:21462784-21462981 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 149
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 18, 0

Conread position: 116-325
Cow position: chr9:9200640-9200857 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 154
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 28, 137

Conread position: 116-335
Cow position: chr9:39428714-39428945 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 165
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 17, 0

Conread position: 116-393
Cow position: chr9:29808539-29808260 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 203
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 25, 133

Conread position: 118-358
Cow position: chr9:30020049-30019816 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 168
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 21, 34

Conread position: 119-335
Cow position: chr9:42173117-42173330 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 154
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 13, 54

Conread position: 125-324
Cow position: chr9:5172402-5172199 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 151
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 12, 134

Conread position: 131-312
Cow position: chr9:5059252-5059437 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 132
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 68, 0

Conread position: 131-338
Cow position: chr9:43926045-43926253 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 152
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 14, 143

Conread position: 131-358
Cow position: chr9:20896965-20896732 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 166
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 17, 108

Conread position: 131-360
Cow position: chr9:24837605-24837371 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 170
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 17, 182

Conread position: 132-315
Cow position: chr9:64007819-64008007 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 133
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 65, 141

Conread position: 135-347
Cow position: chr9:25469108-25468897 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 153
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 65, 15

Conread position: 136-386
Cow position: chr9:33059216-33059469 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 176
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 61, 14

Conread position: 140-330
Cow position: chr9:20839683-20839488 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 142
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 52, 0

Conread position: 141-324
Cow position: chr9:18237109-18237291 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 138
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 52, 13

Conread position: 141-335
Cow position: chr9:39152626-39152825 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 145
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 56, 9

Conread position: 141-358
Cow position: chr9:36827739-36827534 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 159
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 5, 43

Conread position: 150-346
Cow position: chr9:53794483-53794684 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 147
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 38, 80

Conread position: 151-322
Cow position: chr9:35708575-35708751 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 135
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 46, 0

Conread position: 154-360
Cow position: chr9:50827887-50828094 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 150
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 56, 46

Conread position: 156-338
Cow position: chr9:26645954-26645772 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 33, 11

Conread position: 162-338
Cow position: chr9:9761075-9760896 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 35, 58

Conread position: 167-319
Cow position: chr9:11102771-11102929 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 123
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 24, 0

Conread position: 179-335
Cow position: chr9:2391351-2391196 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 114
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 120, 18

Conread position: 179-362
Cow position: chr9:6347005-6346824 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 128
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 98, 0

Conread position: 191-335
Cow position: chr9:62330999-62331143 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 107
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 65, 60

Conread position: 206-324
Cow position: chr9:21566627-21566745 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.