Cow genome map
| Conread name: | Ss1.1-rdbla0108_i21.5 |
| Conread position: | 50-338 |
| Cow position: | chrX:18287171-18286878 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 19, 61 |
| Conread position: | 52-339 |
| Cow position: | chrX:27771668-27771372 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 57, 200 |
| Conread position: | 92-382 |
| Cow position: | chrX:21640374-21640668 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 19, 26 |
| Conread position: | 103-309 |
| Cow position: | chrX:11562117-11562324 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 94, 31 |
| Conread position: | 103-324 |
| Cow position: | chrX:46083933-46084163 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 94, 13 |
| Conread position: | 104-333 |
| Cow position: | chrX:26619145-26618918 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 96, 12 |
| Conread position: | 106-342 |
| Cow position: | chrX:5046933-5046705 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 155, 11 |
| Conread position: | 110-338 |
| Cow position: | chrX:31340677-31340916 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 33, 7 |
| Conread position: | 111-337 |
| Cow position: | chrX:23414403-23414172 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 26, 136 |
| Conread position: | 111-382 |
| Cow position: | chrX:33803038-33802763 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 23, 246 |
| Conread position: | 112-304 |
| Cow position: | chrX:25338154-25338358 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 112-307 |
| Cow position: | chrX:9539293-9539495 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 22, 170 |
| Conread position: | 112-307 |
| Cow position: | chrX:9839195-9839397 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 22, 170 |
| Conread position: | 112-309 |
| Cow position: | chrX:28787324-28787520 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 22, 38 |
| Conread position: | 112-310 |
| Cow position: | chrX:19678297-19678098 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 20, 49 |
| Conread position: | 112-318 |
| Cow position: | chrX:630339-630123 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 85, 19 |
| Conread position: | 112-324 |
| Cow position: | chrX:6563490-6563708 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 22, 202 |
| Conread position: | 112-324 |
| Cow position: | chrX:21664753-21664534 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 21, 203 |
| Conread position: | 112-324 |
| Cow position: | chrX:38999824-39000039 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 169 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 35, 22 |
| Conread position: | 112-338 |
| Cow position: | chrX:27287766-27287534 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 25, 149 |
| Conread position: | 115-309 |
| Cow position: | chrX:27176344-27176138 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 19, 169 |
| Conread position: | 115-312 |
| Cow position: | chrX:47744064-47744266 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 24, 36 |
| Conread position: | 115-318 |
| Cow position: | chrX:26940531-26940333 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 146, 35 |
| Conread position: | 116-264 |
| Cow position: | chrX:39546003-39545846 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 18, 112 |
| Conread position: | 116-324 |
| Cow position: | chrX:36009939-36009725 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 30 |
| Conread position: | 116-345 |
| Cow position: | chrX:7425442-7425677 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 29, 39 |
| Conread position: | 116-347 |
| Cow position: | chrX:7497213-7497447 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 18, 138 |
| Conread position: | 116-365 |
| Cow position: | chrX:16514291-16514041 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 18, 69 |
| Conread position: | 128-324 |
| Cow position: | chrX:23179294-23179091 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 63, 162 |
| Conread position: | 131-362 |
| Cow position: | chrX:25713782-25714024 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 133-335 |
| Cow position: | chrX:20376959-20377165 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 120 |
| Conread position: | 141-324 |
| Cow position: | chrX:18456404-18456591 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 56, 106 |
| Conread position: | 141-335 |
| Cow position: | chrX:40789211-40789405 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 54, 13 |
| Conread position: | 142-335 |
| Cow position: | chrX:29874370-29874170 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 52, 8 |
| Conread position: | 146-312 |
| Cow position: | chrX:16419154-16419325 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 146-362 |
| Cow position: | chrX:159752-159531 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 54, 112 |
| Conread position: | 157-324 |
| Cow position: | chrX:34470734-34470901 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 36, 120 |
| Conread position: | 158-335 |
| Cow position: | chrX:33585518-33585690 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 191-310 |
| Cow position: | chrX:3951098-3951217 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 191-319 |
| Cow position: | chrX:10289569-10289444 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 191-324 |
| Cow position: | chrX:46028704-46028571 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 191-330 |
| Cow position: | chrX:18417247-18417110 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 192-351 |
| Cow position: | chrX:488737-488893 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 192-360 |
| Cow position: | chrX:25602389-25602556 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 196-347 |
| Cow position: | chrX:31273265-31273416 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 199-324 |
| Cow position: | chrX:8103224-8103102 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 62, 43 |
| Conread position: | 199-354 |
| Cow position: | chrX:48428579-48428734 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.