Cow genome map
| Conread name: | Ss1.1-rebs25c_d20.5 |
| Conread position: | 62-509 |
| Cow position: | chr14:25895755-25896203 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 278 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 68-470 |
| Cow position: | chr14:25894922-25895324 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 260 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 341, 319 |
| Conread position: | 70-485 |
| Cow position: | chr14:25877389-25877804 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 249, 256 |
| Conread position: | 70-513 |
| Cow position: | chr14:25836361-25836805 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 441, 0 |
| Conread position: | 71-468 |
| Cow position: | chr14:25895597-25895994 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 254 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 71-485 |
| Cow position: | chr14:25860339-25860753 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 248, 255 |
| Conread position: | 71-508 |
| Cow position: | chr14:25876718-25877155 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 329, 335 |
| Conread position: | 71-509 |
| Cow position: | chr14:25895933-25896371 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 267 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 71-511 |
| Cow position: | chr14:433789-434229 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 16 |
| Conread position: | 72-355 |
| Cow position: | chr14:3079942-3079657 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 271, 0 |
| Conread position: | 72-467 |
| Cow position: | chr14:3127874-3127480 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 0 |
| Conread position: | 72-470 |
| Cow position: | chr14:25895430-25895828 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 257 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 72-489 |
| Cow position: | chr14:25895010-25895427 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 262 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 155, 171 |
| Conread position: | 72-508 |
| Cow position: | chr14:3061089-3060653 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 153 |
| Conread position: | 72-509 |
| Cow position: | chr14:3156046-3156483 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 276 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 72-509 |
| Cow position: | chr14:25836447-25836884 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 253 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 72-511 |
| Cow position: | chr14:25895346-25895785 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 72-513 |
| Cow position: | chr14:3061341-3060899 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 279 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 59, 54 |
| Conread position: | 72-514 |
| Cow position: | chr14:680455-680897 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 419, 412 |
| Conread position: | 72-514 |
| Cow position: | chr14:25895094-25895536 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 152 |
| Conread position: | 72-514 |
| Cow position: | chr14:25895514-25895956 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 71 |
| Conread position: | 73-352 |
| Cow position: | chr14:3155558-3155837 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 252, 239 |
| Conread position: | 73-385 |
| Cow position: | chr14:663422-663110 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 58, 53 |
| Conread position: | 73-416 |
| Cow position: | chr14:447906-448249 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 40, 57 |
| Conread position: | 73-424 |
| Cow position: | chr14:3127621-3127270 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 151, 139 |
| Conread position: | 73-440 |
| Cow position: | chr14:3128041-3127674 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 238 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 147, 153 |
| Conread position: | 73-498 |
| Cow position: | chr14:447822-448247 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 266 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-507 |
| Cow position: | chr14:433959-434393 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 57 |
| Conread position: | 73-507 |
| Cow position: | chr14:3127705-3127271 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 336, 331 |
| Conread position: | 73-508 |
| Cow position: | chr14:3080445-3080010 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-509 |
| Cow position: | chr14:680708-681144 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 277 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 169, 159 |
| Conread position: | 73-509 |
| Cow position: | chr14:680792-681228 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 62, 70 |
| Conread position: | 73-509 |
| Cow position: | chr14:3080109-3079673 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 40 |
| Conread position: | 73-509 |
| Cow position: | chr14:3080361-3079925 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-509 |
| Cow position: | chr14:3127957-3127521 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-509 |
| Cow position: | chr14:25895263-25895699 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 235 |
| Conread position: | 73-509 |
| Cow position: | chr14:25895683-25896119 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 267 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-511 |
| Cow position: | chr14:433875-434313 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 156 |
| Conread position: | 73-511 |
| Cow position: | chr14:3061172-3060734 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 157 |
| Conread position: | 73-511 |
| Cow position: | chr14:3061256-3060818 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 53 |
| Conread position: | 73-511 |
| Cow position: | chr14:3080277-3079839 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-511 |
| Cow position: | chr14:3080613-3080175 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 277 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 46, 40 |
| Conread position: | 73-513 |
| Cow position: | chr14:3061592-3061151 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 283 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 80, 109 |
| Conread position: | 73-514 |
| Cow position: | chr14:447570-448011 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-514 |
| Cow position: | chr14:447654-448095 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 163 |
| Conread position: | 73-514 |
| Cow position: | chr14:447738-448179 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 278 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-514 |
| Cow position: | chr14:680540-680981 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-514 |
| Cow position: | chr14:3061424-3060983 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-514 |
| Cow position: | chr14:3061676-3061235 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 279 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 164, 170 |
| Conread position: | 73-514 |
| Cow position: | chr14:3080193-3079752 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-514 |
| Cow position: | chr14:3080529-3080088 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 329 |
| Conread position: | 73-514 |
| Cow position: | chr14:3080697-3080256 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-514 |
| Cow position: | chr14:3080781-3080340 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-514 |
| Cow position: | chr14:3080865-3080424 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 277 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-514 |
| Cow position: | chr14:3127789-3127348 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 274 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-514 |
| Cow position: | chr14:3128125-3127684 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-514 |
| Cow position: | chr14:25895179-25895620 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 79-514 |
| Cow position: | chr14:25836706-25837141 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 82-514 |
| Cow position: | chr14:3061499-3061067 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 82-514 |
| Cow position: | chr14:25877317-25877749 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 253 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 315, 326 |
| Conread position: | 83-514 |
| Cow position: | chr14:680634-681065 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 238 |
| Conread position: | 84-509 |
| Cow position: | chr14:25877151-25877576 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 248 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 85-506 |
| Cow position: | chr14:3155975-3156396 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 264 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 61, 74 |
| Conread position: | 85-514 |
| Cow position: | chr14:3080937-3080508 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 267 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 85-517 |
| Cow position: | chr14:680384-680816 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 90-481 |
| Cow position: | chr14:663488-663098 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 125, 14 |
| Conread position: | 91-512 |
| Cow position: | chr14:3155408-3155829 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 272 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 62, 68 |
| Conread position: | 91-514 |
| Cow position: | chr14:680222-680645 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 91-514 |
| Cow position: | chr14:3061742-3061319 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 313 |
| Conread position: | 91-517 |
| Cow position: | chr14:680306-680732 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 402, 396 |
| Conread position: | 99-507 |
| Cow position: | chr14:447512-447920 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 128-511 |
| Cow position: | chr14:433762-434145 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 43 |
| Conread position: | 128-517 |
| Cow position: | chr14:680175-680564 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 237, 241 |
| Conread position: | 146-495 |
| Cow position: | chr14:3128136-3127787 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 155-514 |
| Cow position: | chr14:25894925-25895284 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 235 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 69, 64 |
| Conread position: | 171-403 |
| Cow position: | chr14:185-417 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 182-509 |
| Cow position: | chr14:663480-663154 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 117, 5 |
| Conread position: | 193-517 |
| Cow position: | chr14:447522-447846 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 215 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 300, 288 |
| Conread position: | 202-485 |
| Cow position: | chr14:25836157-25836440 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 202-514 |
| Cow position: | chr14:3128164-3127852 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 267-509 |
| Cow position: | chr14:447512-447754 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 48, 39 |
Show alignments to all cow chromosomes.