Cow genome map

Conread name: Ss1.1-rebs25c_d20.5

Conread position: 1-72
Cow position:
Alignm length: 72
Alignm identity: 71
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 16-511
Cow position:
Alignm length: 500
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 17

Conread position: 36-511
Cow position:
Alignm length: 480
Alignm identity: 295
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 26, 45

Conread position: 63-475
Cow position:
Alignm length: 418
Alignm identity: 254
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 6, 51

Conread position: 70-262
Cow position:
Alignm length: 193
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 70-405
Cow position:
Alignm length: 337
Alignm identity: 210
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 243, 253

Conread position: 70-479
Cow position:
Alignm length: 410
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 70-511
Cow position:
Alignm length: 444
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 373, 389

Conread position: 70-517
Cow position:
Alignm length: 450
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 77

Conread position: 71-430
Cow position:
Alignm length: 361
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 332, 338

Conread position: 71-498
Cow position:
Alignm length: 429
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 7

Conread position: 71-509
Cow position:
Alignm length: 439
Alignm identity: 275
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 72-288
Cow position:
Alignm length: 218
Alignm identity: 146
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 199, 0

Conread position: 72-339
Cow position:
Alignm length: 268
Alignm identity: 187
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 72-343
Cow position:
Alignm length: 272
Alignm identity: 182
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 72-378
Cow position:
Alignm length: 309
Alignm identity: 191
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 67, 76

Conread position: 72-384
Cow position:
Alignm length: 313
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 72-397
Cow position:
Alignm length: 328
Alignm identity: 205
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 296, 291

Conread position: 72-408
Cow position:
Alignm length: 339
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 248

Conread position: 72-417
Cow position:
Alignm length: 346
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 72-417
Cow position:
Alignm length: 349
Alignm identity: 232
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 272, 277

Conread position: 72-428
Cow position:
Alignm length: 358
Alignm identity: 231
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 331, 337

Conread position: 72-429
Cow position:
Alignm length: 363
Alignm identity: 227
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 185, 198

Conread position: 72-506
Cow position:
Alignm length: 435
Alignm identity: 259
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 72-509
Cow position:
Alignm length: 441
Alignm identity: 277
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 81, 87

Conread position: 72-509
Cow position:
Alignm length: 438
Alignm identity: 273
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 289, 0

Conread position: 72-511
Cow position:
Alignm length: 441
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 239

Conread position: 73-327
Cow position:
Alignm length: 256
Alignm identity: 173
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 149, 145

Conread position: 73-354
Cow position:
Alignm length: 283
Alignm identity: 194
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 267, 42

Conread position: 73-395
Cow position:
Alignm length: 324
Alignm identity: 202
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 229, 238

Conread position: 73-401
Cow position:
Alignm length: 330
Alignm identity: 203
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 312, 306

Conread position: 73-423
Cow position:
Alignm length: 352
Alignm identity: 215
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 296, 291

Conread position: 73-423
Cow position:
Alignm length: 351
Alignm identity: 222
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 61, 0

Conread position: 73-437
Cow position:
Alignm length: 366
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 253

Conread position: 73-440
Cow position:
Alignm length: 369
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 170

Conread position: 73-451
Cow position:
Alignm length: 380
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 366, 0

Conread position: 73-467
Cow position:
Alignm length: 395
Alignm identity: 230
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 390, 0

Conread position: 73-468
Cow position:
Alignm length: 396
Alignm identity: 235
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 73-468
Cow position:
Alignm length: 396
Alignm identity: 236
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 73-469
Cow position:
Alignm length: 399
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 51

Conread position: 73-470
Cow position:
Alignm length: 400
Alignm identity: 246
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 46, 40

Conread position: 73-471
Cow position:
Alignm length: 399
Alignm identity: 256
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 73-485
Cow position:
Alignm length: 414
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 40

Conread position: 73-485
Cow position:
Alignm length: 413
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 73-490
Cow position:
Alignm length: 418
Alignm identity: 255
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 414, 0

Conread position: 73-494
Cow position:
Alignm length: 422
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 73-495
Cow position:
Alignm length: 425
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 80

Conread position: 73-507
Cow position:
Alignm length: 436
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 420, 414

Conread position: 73-507
Cow position:
Alignm length: 435
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 73-508
Cow position:
Alignm length: 437
Alignm identity: 266
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 239, 145

Conread position: 73-509
Cow position:
Alignm length: 439
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 146

Conread position: 73-509
Cow position:
Alignm length: 439
Alignm identity: 261
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 48, 70

Conread position: 73-509
Cow position:
Alignm length: 438
Alignm identity: 275
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 163, 170

Conread position: 73-509
Cow position:
Alignm length: 437
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 0

Conread position: 73-511
Cow position:
Alignm length: 446
Alignm identity: 262
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 220, 300

Conread position: 73-511
Cow position:
Alignm length: 439
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 73-511
Cow position:
Alignm length: 441
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 57

Conread position: 73-511
Cow position:
Alignm length: 441
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 40

Conread position: 73-511
Cow position:
Alignm length: 439
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 73-511
Cow position:
Alignm length: 439
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 73-512
Cow position:
Alignm length: 443
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 146

Conread position: 73-513
Cow position:
Alignm length: 443
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 336, 324

Conread position: 73-514
Cow position:
Alignm length: 442
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 291, 0

Conread position: 73-519
Cow position:
Alignm length: 449
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 40

Conread position: 73-525
Cow position:
Alignm length: 457
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 248

Conread position: 73-531
Cow position:
Alignm length: 460
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 397, 407

Conread position: 73-611
Cow position:
Alignm length: 542
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 488, 469

Conread position: 79-486
Cow position:
Alignm length: 412
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 58

Conread position: 79-511
Cow position:
Alignm length: 436
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 34

Conread position: 81-412
Cow position:
Alignm length: 333
Alignm identity: 215
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 11, 0

Conread position: 81-479
Cow position:
Alignm length: 399
Alignm identity: 231
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 82-485
Cow position:
Alignm length: 406
Alignm identity: 243
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 71, 77

Conread position: 82-509
Cow position:
Alignm length: 429
Alignm identity: 272
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 301, 294

Conread position: 83-516
Cow position:
Alignm length: 436
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 60

Conread position: 84-468
Cow position:
Alignm length: 388
Alignm identity: 240
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 98, 93

Conread position: 85-401
Cow position:
Alignm length: 320
Alignm identity: 205
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 13, 33

Conread position: 85-522
Cow position:
Alignm length: 441
Alignm identity: 277
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 284, 122

Conread position: 87-509
Cow position:
Alignm length: 424
Alignm identity: 254
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 380, 373

Conread position: 89-499
Cow position:
Alignm length: 413
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 129

Conread position: 89-508
Cow position:
Alignm length: 421
Alignm identity: 247
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 400, 391

Conread position: 89-535
Cow position:
Alignm length: 447
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 422, 0

Conread position: 91-509
Cow position:
Alignm length: 419
Alignm identity: 242
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 93-511
Cow position:
Alignm length: 419
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 94-423
Cow position:
Alignm length: 331
Alignm identity: 211
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 26, 19

Conread position: 99-462
Cow position:
Alignm length: 366
Alignm identity: 231
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 47, 39

Conread position: 99-514
Cow position:
Alignm length: 416
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 104-511
Cow position:
Alignm length: 412
Alignm identity: 259
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 27, 22

Conread position: 108-512
Cow position:
Alignm length: 405
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 109-513
Cow position:
Alignm length: 407
Alignm identity: 261
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 212, 216

Conread position: 117-469
Cow position:
Alignm length: 354
Alignm identity: 231
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 111, 122

Conread position: 118-472
Cow position:
Alignm length: 356
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 291

Conread position: 128-509
Cow position:
Alignm length: 383
Alignm identity: 244
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 363, 359

Conread position: 128-511
Cow position:
Alignm length: 385
Alignm identity: 241
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 363, 359

Conread position: 140-507
Cow position:
Alignm length: 368
Alignm identity: 216
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 143-450
Cow position:
Alignm length: 308
Alignm identity: 188
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 156-513
Cow position:
Alignm length: 359
Alignm identity: 217
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 355, 0

Conread position: 162-511
Cow position:
Alignm length: 350
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 165-507
Cow position:
Alignm length: 344
Alignm identity: 228
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 11, 0

Conread position: 174-517
Cow position:
Alignm length: 344
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 180-495
Cow position:
Alignm length: 318
Alignm identity: 208
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 48, 53

Conread position: 181-485
Cow position:
Alignm length: 306
Alignm identity: 198
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 128, 6

Conread position: 184-483
Cow position:
Alignm length: 301
Alignm identity: 189
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 225, 219

Conread position: 190-511
Cow position:
Alignm length: 325
Alignm identity: 205
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 10, 23

Conread position: 193-468
Cow position:
Alignm length: 278
Alignm identity: 182
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 37, 28

Conread position: 200-513
Cow position:
Alignm length: 317
Alignm identity: 200
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 24, 18

Conread position: 201-468
Cow position:
Alignm length: 272
Alignm identity: 178
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 24, 247

Conread position: 202-495
Cow position:
Alignm length: 295
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 270

Conread position: 202-511
Cow position:
Alignm length: 314
Alignm identity: 198
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 109, 122

Conread position: 220-526
Cow position:
Alignm length: 308
Alignm identity: 195
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 24, 13

Conread position: 265-511
Cow position:
Alignm length: 248
Alignm identity: 168
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 56, 7

Conread position: 265-511
Cow position:
Alignm length: 248
Alignm identity: 175
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 61, 54

Conread position: 277-514
Cow position:
Alignm length: 238
Alignm identity: 157
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 283-525
Cow position:
Alignm length: 246
Alignm identity: 168
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 228, 0

Conread position: 330-511
Cow position:
Alignm length: 183
Alignm identity: 126
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 73, 79

Conread position: 337-513
Cow position:
Alignm length: 179
Alignm identity: 124
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 13, 20

Conread position: 624-787
Cow position:
Alignm length: 167
Alignm identity: 127
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 11, 65

Show alignments to all cow chromosomes.