Cow genome map
| Conread name: | Ss1.1-rebs25c_d20.5 |
| Conread position: | 9-509 |
| Cow position: | chr4:65703047-65702547 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 296 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 117, 60 |
| Conread position: | 45-528 |
| Cow position: | chr4:65261685-65261200 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 306 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 21, 15 |
| Conread position: | 47-437 |
| Cow position: | chr4:65702840-65702452 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 27, 12 |
| Conread position: | 63-514 |
| Cow position: | chr4:65703616-65703163 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 255 |
| Conread position: | 69-414 |
| Cow position: | chr4:65121760-65122105 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 69-508 |
| Cow position: | chr4:65121592-65122031 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 275 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 70-416 |
| Cow position: | chr4:65350441-65350784 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 153, 46 |
| Conread position: | 70-467 |
| Cow position: | chr4:65121677-65122074 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 163 |
| Conread position: | 70-514 |
| Cow position: | chr4:65350189-65350630 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 274 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 162, 148 |
| Conread position: | 72-347 |
| Cow position: | chr4:65146482-65146757 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 63, 72 |
| Conread position: | 72-348 |
| Cow position: | chr4:65494705-65494429 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 69, 75 |
| Conread position: | 72-352 |
| Cow position: | chr4:65703269-65702992 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 151, 103 |
| Conread position: | 72-430 |
| Cow position: | chr4:65494789-65494431 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 153 |
| Conread position: | 72-469 |
| Cow position: | chr4:65350359-65350753 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 331, 92 |
| Conread position: | 72-471 |
| Cow position: | chr4:65261574-65261175 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 259 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 66, 76 |
| Conread position: | 72-471 |
| Cow position: | chr4:65494879-65494474 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 250 |
| Conread position: | 73-255 |
| Cow position: | chr4:65157994-65158176 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 159, 145 |
| Conread position: | 73-428 |
| Cow position: | chr4:65261489-65261134 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 240, 233 |
| Conread position: | 73-430 |
| Cow position: | chr4:65703352-65702998 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 162, 154 |
| Conread position: | 73-511 |
| Cow position: | chr4:65494962-65494518 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 75 |
| Conread position: | 73-513 |
| Cow position: | chr4:65350108-65350546 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 263 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 236, 253 |
| Conread position: | 75-474 |
| Cow position: | chr4:65146402-65146798 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 149, 14 |
| Conread position: | 79-512 |
| Cow position: | chr4:65350282-65350711 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 272 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 140, 154 |
| Conread position: | 91-506 |
| Cow position: | chr4:65702881-65702466 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 249 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 128, 142 |
| Conread position: | 91-507 |
| Cow position: | chr4:65350042-65350458 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 126, 142 |
| Conread position: | 94-511 |
| Cow position: | chr4:65703667-65703250 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 51 |
| Conread position: | 97-511 |
| Cow position: | chr4:65495022-65494602 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 136 |
| Conread position: | 101-345 |
| Cow position: | chr4:65157938-65158182 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 40, 46 |
| Conread position: | 108-345 |
| Cow position: | chr4:65121154-65121391 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 115, 125 |
| Conread position: | 139-510 |
| Cow position: | chr4:65157804-65158179 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 247 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 7, 25 |
| Conread position: | 147-511 |
| Cow position: | chr4:65121586-65121950 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 17, 24 |
| Conread position: | 175-490 |
| Cow position: | chr4:65495028-65494708 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 175, 240 |
| Conread position: | 178-344 |
| Cow position: | chr4:65146926-65147093 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 144 |
| Conread position: | 184-391 |
| Cow position: | chr4:65121146-65121353 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 39, 49 |
| Conread position: | 187-513 |
| Cow position: | chr4:65121542-65121869 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 37, 46 |
| Conread position: | 192-472 |
| Cow position: | chr4:65146434-65146714 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 134, 127 |
| Conread position: | 202-430 |
| Cow position: | chr4:65546412-65546185 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 264-511 |
| Cow position: | chr4:65495023-65494770 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 127, 136 |
| Conread position: | 267-472 |
| Cow position: | chr4:65495293-65495088 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 268-508 |
| Cow position: | chr4:65121146-65121386 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 276-507 |
| Cow position: | chr4:65146434-65146665 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 198, 207 |
| Conread position: | 282-522 |
| Cow position: | chr4:65546416-65546176 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.