Cow genome map


           Conread name:
           Ss1.1-rece21c_c9.5
        

               Conread position:
               1-433
               

               Cow position:
               
               

               Alignm length:
               433
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-694
               

               Cow position:
               
               

               Alignm length:
               697
               

               Alignm identity:
               461
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 86
               

               Conread position:
               1-709
               

               Cow position:
               
               

               Alignm length:
               711
               

               Alignm identity:
               452
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               504, 511
               

               Conread position:
               1-872
               

               Cow position:
               
               

               Alignm length:
               885
               

               Alignm identity:
               580
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               661, 667
               

               Conread position:
               1-874
               

               Cow position:
               
               

               Alignm length:
               882
               

               Alignm identity:
               574
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               662, 669
               

               Conread position:
               2-515
               

               Cow position:
               
               

               Alignm length:
               514
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-598
               

               Cow position:
               
               

               Alignm length:
               597
               

               Alignm identity:
               408
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-633
               

               Cow position:
               
               

               Alignm length:
               639
               

               Alignm identity:
               387
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               12, 142
               

               Conread position:
               3-226
               

               Cow position:
               
               

               Alignm length:
               224
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-283
               

               Cow position:
               
               

               Alignm length:
               281
               

               Alignm identity:
               197
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-442
               

               Cow position:
               
               

               Alignm length:
               440
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-454
               

               Cow position:
               
               

               Alignm length:
               453
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               441, 447
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               516
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               235, 241
               

               Conread position:
               3-575
               

               Cow position:
               
               

               Alignm length:
               574
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               556, 567
               

               Conread position:
               3-603
               

               Cow position:
               
               

               Alignm length:
               602
               

               Alignm identity:
               399
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 168
               

               Conread position:
               3-655
               

               Cow position:
               
               

               Alignm length:
               654
               

               Alignm identity:
               435
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               236, 242
               

               Conread position:
               3-655
               

               Cow position:
               
               

               Alignm length:
               657
               

               Alignm identity:
               421
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               189, 194
               

               Conread position:
               3-694
               

               Cow position:
               
               

               Alignm length:
               696
               

               Alignm identity:
               469
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               609, 615
               

               Conread position:
               3-701
               

               Cow position:
               
               

               Alignm length:
               700
               

               Alignm identity:
               484
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               676, 654
               

               Conread position:
               3-709
               

               Cow position:
               
               

               Alignm length:
               710
               

               Alignm identity:
               495
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 77
               

               Conread position:
               3-874
               

               Cow position:
               
               

               Alignm length:
               883
               

               Alignm identity:
               579
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               244, 235
               

               Conread position:
               4-655
               

               Cow position:
               
               

               Alignm length:
               654
               

               Alignm identity:
               412
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               249, 118
               

               Conread position:
               4-862
               

               Cow position:
               
               

               Alignm length:
               870
               

               Alignm identity:
               560
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               666, 653
               

               Conread position:
               5-489
               

               Cow position:
               
               

               Alignm length:
               490
               

               Alignm identity:
               296
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               175, 160
               

               Conread position:
               5-655
               

               Cow position:
               
               

               Alignm length:
               653
               

               Alignm identity:
               447
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               255, 240
               

               Conread position:
               5-655
               

               Cow position:
               
               

               Alignm length:
               652
               

               Alignm identity:
               435
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 72
               

               Conread position:
               5-874
               

               Cow position:
               
               

               Alignm length:
               878
               

               Alignm identity:
               571
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               248, 243
               

               Conread position:
               6-367
               

               Cow position:
               
               

               Alignm length:
               362
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-528
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 52
               

               Conread position:
               6-579
               

               Cow position:
               
               

               Alignm length:
               575
               

               Alignm identity:
               333
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               396, 53
               

               Conread position:
               6-655
               

               Cow position:
               
               

               Alignm length:
               657
               

               Alignm identity:
               394
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               42, 51
               

               Conread position:
               6-657
               

               Cow position:
               
               

               Alignm length:
               653
               

               Alignm identity:
               446
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 130
               

               Conread position:
               6-668
               

               Cow position:
               
               

               Alignm length:
               667
               

               Alignm identity:
               449
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               487, 491
               

               Conread position:
               6-683
               

               Cow position:
               
               

               Alignm length:
               683
               

               Alignm identity:
               438
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               237, 245
               

               Conread position:
               6-709
               

               Cow position:
               
               

               Alignm length:
               706
               

               Alignm identity:
               480
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               242, 246
               

               Conread position:
               6-874
               

               Cow position:
               
               

               Alignm length:
               878
               

               Alignm identity:
               563
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 71
               

               Conread position:
               6-874
               

               Cow position:
               
               

               Alignm length:
               879
               

               Alignm identity:
               555
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 74
               

               Conread position:
               7-374
               

               Cow position:
               
               

               Alignm length:
               369
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               249, 231
               

               Conread position:
               7-458
               

               Cow position:
               
               

               Alignm length:
               455
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               241, 245
               

               Conread position:
               7-515
               

               Cow position:
               
               

               Alignm length:
               509
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               7-655
               

               Cow position:
               
               

               Alignm length:
               650
               

               Alignm identity:
               404
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               577, 586
               

               Conread position:
               8-449
               

               Cow position:
               
               

               Alignm length:
               442
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-450
               

               Cow position:
               
               

               Alignm length:
               446
               

               Alignm identity:
               264
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               315, 324
               

               Conread position:
               8-462
               

               Cow position:
               
               

               Alignm length:
               457
               

               Alignm identity:
               270
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               315, 324
               

               Conread position:
               8-549
               

               Cow position:
               
               

               Alignm length:
               544
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               398, 402
               

               Conread position:
               8-577
               

               Cow position:
               
               

               Alignm length:
               570
               

               Alignm identity:
               343
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               127, 0
               

               Conread position:
               8-584
               

               Cow position:
               
               

               Alignm length:
               578
               

               Alignm identity:
               343
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               408, 420
               

               Conread position:
               8-588
               

               Cow position:
               
               

               Alignm length:
               584
               

               Alignm identity:
               350
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               156, 164
               

               Conread position:
               8-588
               

               Cow position:
               
               

               Alignm length:
               584
               

               Alignm identity:
               352
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               240, 253
               

               Conread position:
               8-624
               

               Cow position:
               
               

               Alignm length:
               621
               

               Alignm identity:
               368
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               72, 85
               

               Conread position:
               8-633
               

               Cow position:
               
               

               Alignm length:
               626
               

               Alignm identity:
               414
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-655
               

               Cow position:
               
               

               Alignm length:
               649
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               314, 321
               

               Conread position:
               8-655
               

               Cow position:
               
               

               Alignm length:
               651
               

               Alignm identity:
               382
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               398, 403
               

               Conread position:
               8-655
               

               Cow position:
               
               

               Alignm length:
               654
               

               Alignm identity:
               386
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               72, 85
               

               Conread position:
               8-655
               

               Cow position:
               
               

               Alignm length:
               651
               

               Alignm identity:
               380
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               329, 337
               

               Conread position:
               8-655
               

               Cow position:
               
               

               Alignm length:
               650
               

               Alignm identity:
               417
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               398, 402
               

               Conread position:
               8-655
               

               Cow position:
               
               

               Alignm length:
               654
               

               Alignm identity:
               432
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               234, 230
               

               Conread position:
               8-655
               

               Cow position:
               
               

               Alignm length:
               650
               

               Alignm identity:
               414
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               162, 169
               

               Conread position:
               8-683
               

               Cow position:
               
               

               Alignm length:
               680
               

               Alignm identity:
               406
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               315, 319
               

               Conread position:
               8-874
               

               Cow position:
               
               

               Alignm length:
               879
               

               Alignm identity:
               550
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 76
               

               Conread position:
               9-247
               

               Cow position:
               
               

               Alignm length:
               241
               

               Alignm identity:
               162
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               114, 35
               

               Conread position:
               11-611
               

               Cow position:
               
               

               Alignm length:
               603
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 131
               

               Conread position:
               15-633
               

               Cow position:
               
               

               Alignm length:
               619
               

               Alignm identity:
               403
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               17-573
               

               Cow position:
               
               

               Alignm length:
               562
               

               Alignm identity:
               333
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               147, 156
               

               Conread position:
               17-656
               

               Cow position:
               
               

               Alignm length:
               642
               

               Alignm identity:
               369
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               191, 196
               

               Conread position:
               18-576
               

               Cow position:
               
               

               Alignm length:
               561
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               224, 219
               

               Conread position:
               18-633
               

               Cow position:
               
               

               Alignm length:
               622
               

               Alignm identity:
               369
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               146, 156
               

               Conread position:
               18-693
               

               Cow position:
               
               

               Alignm length:
               684
               

               Alignm identity:
               410
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               146, 155
               

               Conread position:
               18-694
               

               Cow position:
               
               

               Alignm length:
               686
               

               Alignm identity:
               410
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               75, 65
               

               Conread position:
               18-709
               

               Cow position:
               
               

               Alignm length:
               697
               

               Alignm identity:
               414
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               146, 156
               

               Conread position:
               19-598
               

               Cow position:
               
               

               Alignm length:
               581
               

               Alignm identity:
               414
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               229, 7
               

               Conread position:
               19-874
               

               Cow position:
               
               

               Alignm length:
               873
               

               Alignm identity:
               557
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               223, 218
               

               Conread position:
               20-320
               

               Cow position:
               
               

               Alignm length:
               302
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               46, 41
               

               Conread position:
               20-694
               

               Cow position:
               
               

               Alignm length:
               677
               

               Alignm identity:
               454
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               183, 163
               

               Conread position:
               20-694
               

               Cow position:
               
               

               Alignm length:
               678
               

               Alignm identity:
               446
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               239, 229
               

               Conread position:
               25-655
               

               Cow position:
               
               

               Alignm length:
               635
               

               Alignm identity:
               432
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               229, 233
               

               Conread position:
               26-455
               

               Cow position:
               
               

               Alignm length:
               431
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               300, 304
               

               Conread position:
               34-655
               

               Cow position:
               
               

               Alignm length:
               622
               

               Alignm identity:
               417
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               50-710
               

               Cow position:
               
               

               Alignm length:
               669
               

               Alignm identity:
               387
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               43, 36
               

               Conread position:
               52-416
               

               Cow position:
               
               

               Alignm length:
               368
               

               Alignm identity:
               243
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               28, 17
               

               Conread position:
               53-874
               

               Cow position:
               
               

               Alignm length:
               830
               

               Alignm identity:
               533
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               353, 359
               

               Conread position:
               56-655
               

               Cow position:
               
               

               Alignm length:
               601
               

               Alignm identity:
               395
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               350, 41
               

               Conread position:
               63-701
               

               Cow position:
               
               

               Alignm length:
               641
               

               Alignm identity:
               439
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 40
               

               Conread position:
               101-499
               

               Cow position:
               
               

               Alignm length:
               403
               

               Alignm identity:
               258
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               170, 22
               

               Conread position:
               104-363
               

               Cow position:
               
               

               Alignm length:
               262
               

               Alignm identity:
               170
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               139, 134
               

               Conread position:
               104-572
               

               Cow position:
               
               

               Alignm length:
               474
               

               Alignm identity:
               292
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               73, 61
               

               Conread position:
               110-539
               

               Cow position:
               
               

               Alignm length:
               431
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 66
               

               Conread position:
               113-694
               

               Cow position:
               
               

               Alignm length:
               584
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 125
               

               Conread position:
               123-514
               

               Cow position:
               
               

               Alignm length:
               400
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               39, 25
               

               Conread position:
               197-624
               

               Cow position:
               
               

               Alignm length:
               430
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               296, 301
               

               Conread position:
               220-584
               

               Cow position:
               
               

               Alignm length:
               369
               

               Alignm identity:
               246
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               28, 17
               

               Conread position:
               269-655
               

               Cow position:
               
               

               Alignm length:
               390
               

               Alignm identity:
               243
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               133, 22
               

               Conread position:
               278-695
               

               Cow position:
               
               

               Alignm length:
               419
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               385, 391
               

               Conread position:
               283-699
               

               Cow position:
               
               

               Alignm length:
               418
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               379, 386
               

               Conread position:
               360-694
               

               Cow position:
               
               

               Alignm length:
               337
               

               Alignm identity:
               219
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               231, 236
               

               Conread position:
               446-702
               

               Cow position:
               
               

               Alignm length:
               258
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               223, 210
               
Show alignments to all cow chromosomes.