Cow genome map

Conread name: Ss1.1-rece21c_c9.5

Conread position: 1-433
Cow position: chr14:3061095-3060663 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-694
Cow position: chr14:3061431-3060738 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 86

Conread position: 1-709
Cow position: chr14:25895256-25895964 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 504, 511

Conread position: 1-872
Cow position: chr14:3080872-3079995 (view UCSC Genome Browser custom track)
Alignm length: 885
Alignm identity: 580
Alignm E-value: 0
Alignm gaps (pig, cow): 661, 667

Conread position: 1-874
Cow position: chr14:680365-681243 (view UCSC Genome Browser custom track)
Alignm length: 882
Alignm identity: 574
Alignm E-value: 0
Alignm gaps (pig, cow): 662, 669

Conread position: 2-515
Cow position: chr14:433869-434382 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-598
Cow position: chr14:3061262-3060666 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-633
Cow position: chr14:3101029-3100399 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 387
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 12, 142

Conread position: 3-226
Cow position: chr14:3127458-3127235 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 152
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 3-283
Cow position: chr14:3079946-3079666 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 197
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 3-442
Cow position: chr14:3127710-3127271 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-454
Cow position: chr14:433954-434405 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 441, 447

Conread position: 3-515
Cow position: chr14:3061177-3060665 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 241

Conread position: 3-575
Cow position: chr14:680703-681275 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 556, 567

Conread position: 3-603
Cow position: chr14:447649-448249 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 168

Conread position: 3-655
Cow position: chr14:3128130-3127478 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 242

Conread position: 3-655
Cow position: chr14:3155637-3156274 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 194

Conread position: 3-694
Cow position: chr14:3128046-3127355 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 609, 615

Conread position: 3-701
Cow position: chr14:3080366-3079668 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 676, 654

Conread position: 3-709
Cow position: chr14:3080450-3079744 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 77

Conread position: 3-874
Cow position: chr14:3080702-3079826 (view UCSC Genome Browser custom track)
Alignm length: 883
Alignm identity: 579
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 235

Conread position: 4-655
Cow position: chr14:3155722-3156358 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 118

Conread position: 4-862
Cow position: chr14:3061596-3060734 (view UCSC Genome Browser custom track)
Alignm length: 870
Alignm identity: 560
Alignm E-value: 0
Alignm gaps (pig, cow): 666, 653

Conread position: 5-489
Cow position: chr14:25910809-25911293 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 296
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 175, 160

Conread position: 5-655
Cow position: chr14:447567-448217 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 240

Conread position: 5-655
Cow position: chr14:3127960-3127310 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 72

Conread position: 5-874
Cow position: chr14:3080784-3079910 (view UCSC Genome Browser custom track)
Alignm length: 878
Alignm identity: 571
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 243

Conread position: 6-367
Cow position: chr14:3080027-3079666 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 6-528
Cow position: chr14:3155961-3156483 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 52

Conread position: 6-579
Cow position: chr14:3100940-3100369 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 333
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 396, 53

Conread position: 6-655
Cow position: chr14:3101105-3100461 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 394
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 42, 51

Conread position: 6-657
Cow position: chr14:680286-680937 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 130

Conread position: 6-668
Cow position: chr14:3061510-3060846 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 487, 491

Conread position: 6-683
Cow position: chr14:3155472-3156134 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 245

Conread position: 6-709
Cow position: chr14:3061678-3060975 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 246

Conread position: 6-874
Cow position: chr14:3080951-3080078 (view UCSC Genome Browser custom track)
Alignm length: 878
Alignm identity: 563
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 71

Conread position: 6-874
Cow position: chr14:3081036-3080162 (view UCSC Genome Browser custom track)
Alignm length: 879
Alignm identity: 555
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 74

Conread position: 7-374
Cow position: chr14:447905-448272 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 231

Conread position: 7-458
Cow position: chr14:3080110-3079657 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 245

Conread position: 7-515
Cow position: chr14:3127790-3127282 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 7-655
Cow position: chr14:25895682-25896330 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 577, 586

Conread position: 8-449
Cow position: chr14:3156047-3156488 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 8-450
Cow position: chr14:25860341-25860783 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 264
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 315, 324

Conread position: 8-462
Cow position: chr14:25877392-25877846 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 270
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 315, 324

Conread position: 8-549
Cow position: chr14:25895851-25896392 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 398, 402

Conread position: 8-577
Cow position: chr14:3101187-3100623 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 343
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 127, 0

Conread position: 8-584
Cow position: chr14:25836616-25837192 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 343
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 408, 420

Conread position: 8-588
Cow position: chr14:25860173-25860753 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 350
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 156, 164

Conread position: 8-588
Cow position: chr14:25877224-25877804 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 352
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 240, 253

Conread position: 8-624
Cow position: chr14:25877140-25877757 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 368
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 72, 85

Conread position: 8-633
Cow position: chr14:3127873-3127248 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 8-655
Cow position: chr14:3061340-3060693 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 321

Conread position: 8-655
Cow position: chr14:25836112-25836759 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 382
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 398, 403

Conread position: 8-655
Cow position: chr14:25860089-25860736 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 386
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 72, 85

Conread position: 8-655
Cow position: chr14:25876636-25877283 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 380
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 329, 337

Conread position: 8-655
Cow position: chr14:25895095-25895742 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 398, 402

Conread position: 8-655
Cow position: chr14:25895515-25896162 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 230

Conread position: 8-655
Cow position: chr14:25895599-25896246 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 169

Conread position: 8-683
Cow position: chr14:25836196-25836871 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 319

Conread position: 8-874
Cow position: chr14:25895179-25896050 (view UCSC Genome Browser custom track)
Alignm length: 879
Alignm identity: 550
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 76

Conread position: 9-247
Cow position: chr14:438345-438581 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 162
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 114, 35

Conread position: 11-611
Cow position: chr14:3155882-3156482 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 131

Conread position: 15-633
Cow position: chr14:680631-681249 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 17-573
Cow position: chr14:25877317-25877873 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 333
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 147, 156

Conread position: 17-656
Cow position: chr14:25836289-25836928 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 369
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 191, 196

Conread position: 18-576
Cow position: chr14:25895777-25896335 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 219

Conread position: 18-633
Cow position: chr14:25860015-25860630 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 369
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 146, 156

Conread position: 18-693
Cow position: chr14:25876562-25877237 (view UCSC Genome Browser custom track)
Alignm length: 684
Alignm identity: 410
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 146, 155

Conread position: 18-694
Cow position: chr14:25859931-25860607 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 410
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 75, 65

Conread position: 18-709
Cow position: chr14:25877066-25877756 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 414
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 146, 156

Conread position: 19-598
Cow position: chr14:433803-434381 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 7

Conread position: 19-874
Cow position: chr14:25894938-25895798 (view UCSC Genome Browser custom track)
Alignm length: 873
Alignm identity: 557
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 218

Conread position: 20-320
Cow position: chr14:663410-663110 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 198
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 46, 41

Conread position: 20-694
Cow position: chr14:680216-680890 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 163

Conread position: 20-694
Cow position: chr14:25895023-25895697 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 229

Conread position: 25-655
Cow position: chr14:3061743-3061113 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 233

Conread position: 26-455
Cow position: chr14:3155408-3155837 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 304

Conread position: 34-655
Cow position: chr14:447512-448133 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 50-710
Cow position: chr14:25876426-25877085 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 387
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 43, 36

Conread position: 52-416
Cow position: chr14:663462-663098 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 243
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 28, 17

Conread position: 53-874
Cow position: chr14:3128164-3127338 (view UCSC Genome Browser custom track)
Alignm length: 830
Alignm identity: 533
Alignm E-value: 0
Alignm gaps (pig, cow): 353, 359

Conread position: 56-655
Cow position: chr14:25894894-25895490 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 350, 41

Conread position: 63-701
Cow position: chr14:433762-434400 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 40

Conread position: 101-499
Cow position: chr14:663496-663099 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 258
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 170, 22

Conread position: 104-363
Cow position: chr14:420636-420896 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 170
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 139, 134

Conread position: 104-572
Cow position: chr14:25910824-25911292 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 292
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 73, 61

Conread position: 110-539
Cow position: chr14:3155408-3155837 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 66

Conread position: 113-694
Cow position: chr14:3155900-3156481 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 125

Conread position: 123-514
Cow position: chr14:31-425 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 246
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 39, 25

Conread position: 197-624
Cow position: chr14:3155411-3155838 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 301

Conread position: 220-584
Cow position: chr14:663462-663098 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 246
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 28, 17

Conread position: 269-655
Cow position: chr14:663496-663111 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 243
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 133, 22

Conread position: 278-695
Cow position: chr14:3155408-3155825 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 385, 391

Conread position: 283-699
Cow position: chr14:447509-447925 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 379, 386

Conread position: 360-694
Cow position: chr14:3061744-3061410 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 219
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 231, 236

Conread position: 446-702
Cow position: chr14:3061742-3061487 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 179
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 223, 210

Show alignments to all cow chromosomes.