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Cow genome map

           
Conread name:
           
Ss1.1-rece21c_c9.5
        

               
Conread position:
               
1-651
               

               
Cow position:
               
chr18:49033407-49032757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 82
               

               
Conread position:
               
1-654
               

               
Cow position:
               
chr18:53610408-53609755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
656
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
236, 251
               

               
Conread position:
               
2-542
               

               
Cow position:
               
chr18:49032649-49032110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
338, 6
               

               
Conread position:
               
2-574
               

               
Cow position:
               
chr18:43175127-43174556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
17, 6
               

               
Conread position:
               
2-594
               

               
Cow position:
               
chr18:40306734-40307326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
148, 6
               

               
Conread position:
               
3-288
               

               
Cow position:
               
chr18:55497309-55497022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
198, 178
               

               
Conread position:
               
3-513
               

               
Cow position:
               
chr18:40075169-40075678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
121, 5
               

               
Conread position:
               
3-591
               

               
Cow position:
               
chr18:56493906-56494493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 5
               

               
Conread position:
               
3-598
               

               
Cow position:
               
chr18:55066965-55066370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
3-654
               

               
Cow position:
               
chr18:33064625-33063974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
656
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
65, 59
               

               
Conread position:
               
3-654
               

               
Cow position:
               
chr18:42693987-42693335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
660
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
62, 56
               

               
Conread position:
               
3-654
               

               
Cow position:
               
chr18:53635982-53635332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 5
               

               
Conread position:
               
3-655
               

               
Cow position:
               
chr18:33064289-33063637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
657
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
236, 249
               

               
Conread position:
               
3-655
               

               
Cow position:
               
chr18:33064540-33063889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
610, 5
               

               
Conread position:
               
3-655
               

               
Cow position:
               
chr18:40306650-40307302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
657
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
68, 59
               

               
Conread position:
               
3-655
               

               
Cow position:
               
chr18:49033237-49032585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
656
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 249
               

               
Conread position:
               
3-655
               

               
Cow position:
               
chr18:56329958-56329306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
657
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 166
               

               
Conread position:
               
3-694
               

               
Cow position:
               
chr18:49033069-49032378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
697
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 13
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr18:56316867-56317068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
4-447
               

               
Cow position:
               
chr18:56329285-56328842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 79
               

               
Conread position:
               
4-570
               

               
Cow position:
               
chr18:51400594-51401161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
556, 0
               

               
Conread position:
               
4-874
               

               
Cow position:
               
chr18:56330041-56329166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
881
               

               
Alignm identity:
               
566
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
659, 666
               

               
Conread position:
               
5-307
               

               
Cow position:
               
chr18:44817888-44818190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
226, 235
               

               
Conread position:
               
5-313
               

               
Cow position:
               
chr18:52011876-52011568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-506
               

               
Cow position:
               
chr18:1418065-1418566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
61, 57
               

               
Conread position:
               
5-549
               

               
Cow position:
               
chr18:49022709-49023253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
203, 221
               

               
Conread position:
               
5-549
               

               
Cow position:
               
chr18:53610236-53609693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 233
               

               
Conread position:
               
5-597
               

               
Cow position:
               
chr18:40075086-40075678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
40, 27
               

               
Conread position:
               
5-597
               

               
Cow position:
               
chr18:53560241-53560829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
401, 410
               

               
Conread position:
               
5-655
               

               
Cow position:
               
chr18:50059392-50058742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
51, 59
               

               
Conread position:
               
5-655
               

               
Cow position:
               
chr18:56329704-56329054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
488, 498
               

               
Conread position:
               
5-656
               

               
Cow position:
               
chr18:50059560-50058909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
657
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 60
               

               
Conread position:
               
6-275
               

               
Cow position:
               
chr18:56267396-56267127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
242, 246
               

               
Conread position:
               
6-289
               

               
Cow position:
               
chr18:54668631-54668348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
117, 123
               

               
Conread position:
               
6-454
               

               
Cow position:
               
chr18:55497474-55497028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 193
               

               
Conread position:
               
6-514
               

               
Cow position:
               
chr18:56493992-56494500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
334, 340
               

               
Conread position:
               
6-515
               

               
Cow position:
               
chr18:53586515-53586006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
67, 77
               

               
Conread position:
               
6-515
               

               
Cow position:
               
chr18:55066878-55066369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
13, 8
               

               
Conread position:
               
6-537
               

               
Cow position:
               
chr18:50281822-50282353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
310, 326
               

               
Conread position:
               
6-540
               

               
Cow position:
               
chr18:56391367-56390833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 248
               

               
Conread position:
               
6-541
               

               
Cow position:
               
chr18:56316533-56317068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
466, 461
               

               
Conread position:
               
6-570
               

               
Cow position:
               
chr18:50048907-50048344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
161, 137
               

               
Conread position:
               
6-573
               

               
Cow position:
               
chr18:42675257-42674690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
62, 56
               

               
Conread position:
               
6-582
               

               
Cow position:
               
chr18:49022292-49022866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
369, 306
               

               
Conread position:
               
6-588
               

               
Cow position:
               
chr18:55067046-55066464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
62, 56
               

               
Conread position:
               
6-591
               

               
Cow position:
               
chr18:53559738-53560323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
116, 123
               

               
Conread position:
               
6-611
               

               
Cow position:
               
chr18:56391451-56390846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
323, 316
               

               
Conread position:
               
6-633
               

               
Cow position:
               
chr18:56329451-56328823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
312, 307
               

               
Conread position:
               
6-646
               

               
Cow position:
               
chr18:56391535-56390895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
644
               

               
Alignm identity:
               
464
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
401, 407
               

               
Conread position:
               
6-648
               

               
Cow position:
               
chr18:49032814-49032172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
645
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
6-648
               

               
Cow position:
               
chr18:53586935-53586293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
646
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 255
               

               
Conread position:
               
6-651
               

               
Cow position:
               
chr18:49033150-49032505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
398, 393
               

               
Conread position:
               
6-652
               

               
Cow position:
               
chr18:52012211-52011565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
590, 586
               

               
Conread position:
               
6-653
               

               
Cow position:
               
chr18:53586683-53586036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 186
               

               
Conread position:
               
6-654
               

               
Cow position:
               
chr18:40306401-40307049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
656
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
62, 56
               

               
Conread position:
               
6-654
               

               
Cow position:
               
chr18:52012461-52011815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
6-654
               

               
Cow position:
               
chr18:53559822-53560470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
6-654
               

               
Cow position:
               
chr18:56128185-56128833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
6-655
               

               
Cow position:
               
chr18:33064370-33063721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
655
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
157, 169
               

               
Conread position:
               
6-655
               

               
Cow position:
               
chr18:33064454-33063805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
237, 232
               

               
Conread position:
               
6-655
               

               
Cow position:
               
chr18:40306485-40307134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
405, 392
               

               
Conread position:
               
6-655
               

               
Cow position:
               
chr18:49032898-49032249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 141
               

               
Conread position:
               
6-655
               

               
Cow position:
               
chr18:52012379-52011730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 74
               

               
Conread position:
               
6-655
               

               
Cow position:
               
chr18:53635896-53635247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
607, 612
               

               
Conread position:
               
6-655
               

               
Cow position:
               
chr18:56329535-56328886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 330
               

               
Conread position:
               
6-681
               

               
Cow position:
               
chr18:22843966-22843282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
687
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 326
               

               
Conread position:
               
6-681
               

               
Cow position:
               
chr18:53586851-53586176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
680
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
203, 185
               

               
Conread position:
               
6-683
               

               
Cow position:
               
chr18:47846705-47846028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
684
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 148
               

               
Conread position:
               
6-694
               

               
Cow position:
               
chr18:56329619-56328931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
692
               

               
Alignm identity:
               
471
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 252
               

               
Conread position:
               
6-873
               

               
Cow position:
               
chr18:56128269-56129140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
876
               

               
Alignm identity:
               
534
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
675, 651
               

               
Conread position:
               
7-289
               

               
Cow position:
               
chr18:56391921-56391642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
269, 0
               

               
Conread position:
               
7-349
               

               
Cow position:
               
chr18:56267479-56267137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
7-449
               

               
Cow position:
               
chr18:47846452-47846010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
398, 404
               

               
Conread position:
               
7-458
               

               
Cow position:
               
chr18:53635475-53635025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
252, 238
               

               
Conread position:
               
7-486
               

               
Cow position:
               
chr18:51765429-51764950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
247, 254
               

               
Conread position:
               
7-572
               

               
Cow position:
               
chr18:33064705-33064140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 139
               

               
Conread position:
               
7-590
               

               
Cow position:
               
chr18:53610318-53609735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
317, 323
               

               
Conread position:
               
7-591
               

               
Cow position:
               
chr18:49032729-49032145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
399, 404
               

               
Conread position:
               
7-598
               

               
Cow position:
               
chr18:53635643-53635052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
585, 589
               

               
Conread position:
               
7-619
               

               
Cow position:
               
chr18:56316450-56317062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
573, 568
               

               
Conread position:
               
7-652
               

               
Cow position:
               
chr18:56128522-56129166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
647
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
585, 589
               

               
Conread position:
               
7-655
               

               
Cow position:
               
chr18:42791785-42792433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
52, 58
               

               
Conread position:
               
7-701
               

               
Cow position:
               
chr18:42724607-42723913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
696
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
331, 338
               

               
Conread position:
               
7-701
               

               
Cow position:
               
chr18:56316198-56316892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
697
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 247
               

               
Conread position:
               
7-709
               

               
Cow position:
               
chr18:33064873-33064171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
707
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
12, 7
               

               
Conread position:
               
7-874
               

               
Cow position:
               
chr18:22844304-22843420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
888
               

               
Alignm identity:
               
547
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 326
               

               
Conread position:
               
8-402
               

               
Cow position:
               
chr18:50271695-50272088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
191, 184
               

               
Conread position:
               
8-404
               

               
Cow position:
               
chr18:54668713-54668315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
96, 89
               

               
Conread position:
               
8-481
               

               
Cow position:
               
chr18:1418152-1418627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
13, 8
               

               
Conread position:
               
8-491
               

               
Cow position:
               
chr18:50083768-50084250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
394, 390
               

               
Conread position:
               
8-504
               

               
Cow position:
               
chr18:49032560-49032064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
8-507
               

               
Cow position:
               
chr18:43168026-43168525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
61, 51
               

               
Conread position:
               
8-570
               

               
Cow position:
               
chr18:50099041-50099603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
58, 50
               

               
Conread position:
               
8-570
               

               
Cow position:
               
chr18:50099377-50099940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
64, 77
               

               
Conread position:
               
8-571
               

               
Cow position:
               
chr18:50059137-50058574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
300, 308
               

               
Conread position:
               
8-588
               

               
Cow position:
               
chr18:44398373-44397793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
58, 54
               

               
Conread position:
               
8-588
               

               
Cow position:
               
chr18:47846619-47846039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 71
               

               
Conread position:
               
8-588
               

               
Cow position:
               
chr18:56316367-56316947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
8-611
               

               
Cow position:
               
chr18:55497640-55497037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
414, 422
               

               
Conread position:
               
8-625
               

               
Cow position:
               
chr18:50281740-50282357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 74
               

               
Conread position:
               
8-626
               

               
Cow position:
               
chr18:49032980-49032362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
332, 338
               

               
Conread position:
               
8-632
               

               
Cow position:
               
chr18:42693562-42692938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
631
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
148, 137
               

               
Conread position:
               
8-653
               

               
Cow position:
               
chr18:50083432-50084077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
647
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
605, 610
               

               
Conread position:
               
8-654
               

               
Cow position:
               
chr18:42791030-42791676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
310, 306
               

               
Conread position:
               
8-654
               

               
Cow position:
               
chr18:42792038-42792684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
310, 305
               

               
Conread position:
               
8-654
               

               
Cow position:
               
chr18:49033316-49032670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
564, 559
               

               
Conread position:
               
8-654
               

               
Cow position:
               
chr18:53587017-53586371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
569, 579
               

               
Conread position:
               
8-655
               

               
Cow position:
               
chr18:33064788-33064141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 69
               

               
Conread position:
               
8-655
               

               
Cow position:
               
chr18:42791450-42792097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
11, 5
               

               
Conread position:
               
8-655
               

               
Cow position:
               
chr18:42792122-42792769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
8-655
               

               
Cow position:
               
chr18:53635726-53635079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
505, 500
               

               
Conread position:
               
8-655
               

               
Cow position:
               
chr18:56128439-56129086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
505, 500
               

               
Conread position:
               
8-655
               

               
Cow position:
               
chr18:56329869-56329222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
398, 403
               

               
Conread position:
               
8-656
               

               
Cow position:
               
chr18:50022508-50021854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
662
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
42, 57
               

               
Conread position:
               
8-657
               

               
Cow position:
               
chr18:50099545-50100194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
655
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
66, 60
               

               
Conread position:
               
8-671
               

               
Cow position:
               
chr18:53610485-53609823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
666
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 53
               

               
Conread position:
               
8-694
               

               
Cow position:
               
chr18:42792206-42792892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
689
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
142, 137
               

               
Conread position:
               
8-708
               

               
Cow position:
               
chr18:40074921-40075621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
704
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
77, 65
               

               
Conread position:
               
8-709
               

               
Cow position:
               
chr18:56330205-56329504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
704
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
406, 413
               

               
Conread position:
               
8-715
               

               
Cow position:
               
chr18:56316283-56316988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
709
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
655, 662
               

               
Conread position:
               
9-634
               

               
Cow position:
               
chr18:42693813-42693189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
133, 139
               

               
Conread position:
               
12-590
               

               
Cow position:
               
chr18:1417988-1418566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
138, 134
               

               
Conread position:
               
12-655
               

               
Cow position:
               
chr18:53636058-53635415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
644
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
13-654
               

               
Cow position:
               
chr18:40306324-40306965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
647
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
137, 133
               

               
Conread position:
               
13-665
               

               
Cow position:
               
chr18:56316036-56316689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
656
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 225
               

               
Conread position:
               
14-655
               

               
Cow position:
               
chr18:56128109-56128750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
644
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
391, 400
               

               
Conread position:
               
15-645
               

               
Cow position:
               
chr18:53525681-53526311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
324, 331
               

               
Conread position:
               
16-667
               

               
Cow position:
               
chr18:53635802-53635152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
597, 602
               

               
Conread position:
               
17-453
               

               
Cow position:
               
chr18:42792467-42792903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
17-565
               

               
Cow position:
               
chr18:51368275-51367728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
251, 231
               

               
Conread position:
               
17-590
               

               
Cow position:
               
chr18:53635549-53634977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
527, 516
               

               
Conread position:
               
17-694
               

               
Cow position:
               
chr18:52012284-52011607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
679
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 222
               

               
Conread position:
               
18-506
               

               
Cow position:
               
chr18:42827397-42827884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
174, 6
               

               
Conread position:
               
18-610
               

               
Cow position:
               
chr18:53498303-53498895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
190, 166
               

               
Conread position:
               
19-576
               

               
Cow position:
               
chr18:49021480-49022033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
173, 19
               

               
Conread position:
               
19-694
               

               
Cow position:
               
chr18:55497713-55497038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
677
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
641, 651
               

               
Conread position:
               
20-266
               

               
Cow position:
               
chr18:44817987-44818233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
168, 161
               

               
Conread position:
               
20-367
               

               
Cow position:
               
chr18:50030737-50030391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
137, 220
               

               
Conread position:
               
20-530
               

               
Cow position:
               
chr18:47846523-47846013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
65, 57
               

               
Conread position:
               
20-643
               

               
Cow position:
               
chr18:56316127-56316750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
364, 370
               

               
Conread position:
               
20-874
               

               
Cow position:
               
chr18:56330109-56329250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
866
               

               
Alignm identity:
               
550
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 116
               

               
Conread position:
               
21-598
               

               
Cow position:
               
chr18:56493839-56494416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 183
               

               
Conread position:
               
22-571
               

               
Cow position:
               
chr18:54668951-54668402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
89, 56
               

               
Conread position:
               
23-287
               

               
Cow position:
               
chr18:22843520-22843255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
249, 240
               

               
Conread position:
               
25-236
               

               
Cow position:
               
chr18:54687741-54687952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
26-655
               

               
Cow position:
               
chr18:42724672-42724043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
633
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 32
               

               
Conread position:
               
28-682
               

               
Cow position:
               
chr18:22844367-22843710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
660
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 224
               

               
Conread position:
               
29-624
               

               
Cow position:
               
chr18:50271464-50272060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
39, 33
               

               
Conread position:
               
30-655
               

               
Cow position:
               
chr18:55067106-55066481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
629
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
38, 32
               

               
Conread position:
               
31-654
               

               
Cow position:
               
chr18:50031061-50030436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
633
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
44, 31
               

               
Conread position:
               
35-655
               

               
Cow position:
               
chr18:50848344-50848964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
166, 178
               

               
Conread position:
               
35-694
               

               
Cow position:
               
chr18:56391589-56390931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
660
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
37-455
               

               
Cow position:
               
chr18:56267533-56267113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 221
               

               
Conread position:
               
40-385
               

               
Cow position:
               
chr18:56391972-56391625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
324, 0
               

               
Conread position:
               
40-436
               

               
Cow position:
               
chr18:54668765-54668369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
149, 141
               

               
Conread position:
               
42-523
               

               
Cow position:
               
chr18:54668847-54668362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
36, 28
               

               
Conread position:
               
42-527
               

               
Cow position:
               
chr18:56267612-56267127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
56, 48
               

               
Conread position:
               
44-347
               

               
Cow position:
               
chr18:44818572-44818875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
28, 35
               

               
Conread position:
               
44-391
               

               
Cow position:
               
chr18:44817843-44818190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
274, 284
               

               
Conread position:
               
44-655
               

               
Cow position:
               
chr18:50281692-50282303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 18
               

               
Conread position:
               
50-506
               

               
Cow position:
               
chr18:50295380-50295836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
25, 19
               

               
Conread position:
               
50-527
               

               
Cow position:
               
chr18:49021675-49022153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
196, 209
               

               
Conread position:
               
64-588
               

               
Cow position:
               
chr18:44398401-44397877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
86, 82
               

               
Conread position:
               
70-621
               

               
Cow position:
               
chr18:49022606-49023157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
104, 94
               

               
Conread position:
               
81-681
               

               
Cow position:
               
chr18:52012470-52011872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 23
               

               
Conread position:
               
88-653
               

               
Cow position:
               
chr18:55523622-55524187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
235, 226
               

               
Conread position:
               
89-625
               

               
Cow position:
               
chr18:53586516-53585979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
522, 0
               

               
Conread position:
               
91-654
               

               
Cow position:
               
chr18:42791953-42792516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
395, 390
               

               
Conread position:
               
92-648
               

               
Cow position:
               
chr18:53559992-53560548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
118, 109
               

               
Conread position:
               
103-648
               

               
Cow position:
               
chr18:55067117-55066572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
49, 43
               

               
Conread position:
               
104-655
               

               
Cow position:
               
chr18:1417996-1418547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
104-709
               

               
Cow position:
               
chr18:53560088-53560692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
87, 93
               

               
Conread position:
               
104-870
               

               
Cow position:
               
chr18:33064860-33064088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
777
               

               
Alignm identity:
               
465
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 294
               

               
Conread position:
               
105-654
               

               
Cow position:
               
chr18:33064943-33064394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
140, 155
               

               
Conread position:
               
109-364
               

               
Cow position:
               
chr18:54687741-54687996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
47, 67
               

               
Conread position:
               
113-654
               

               
Cow position:
               
chr18:42744714-42744173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
51, 64
               

               
Conread position:
               
113-655
               

               
Cow position:
               
chr18:50271464-50272006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
39, 33
               

               
Conread position:
               
114-655
               

               
Cow position:
               
chr18:49033378-49032837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
482, 478
               

               
Conread position:
               
119-694
               

               
Cow position:
               
chr18:56391590-56391015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
544, 549
               

               
Conread position:
               
120-559
               

               
Cow position:
               
chr18:44817748-44818190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
23, 33
               

               
Conread position:
               
133-442
               

               
Cow position:
               
chr18:56391963-56391654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
115, 119
               

               
Conread position:
               
134-655
               

               
Cow position:
               
chr18:50083306-50083827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
352, 348
               

               
Conread position:
               
149-654
               

               
Cow position:
               
chr18:50059668-50059163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
15, 28
               

               
Conread position:
               
156-655
               

               
Cow position:
               
chr18:51400242-51400741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
171-654
               

               
Cow position:
               
chr18:42694155-42693671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
38, 30
               

               
Conread position:
               
173-655
               

               
Cow position:
               
chr18:53610571-53610090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 9
               

               
Conread position:
               
174-684
               

               
Cow position:
               
chr18:47846705-47846195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
163, 147
               

               
Conread position:
               
200-688
               

               
Cow position:
               
chr18:54668941-54668450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
54, 46
               

               
Conread position:
               
202-655
               

               
Cow position:
               
chr18:56391591-56391138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
302, 296
               

               
Conread position:
               
203-441
               

               
Cow position:
               
chr18:54664094-54664332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
50, 34
               

               
Conread position:
               
205-431
               

               
Cow position:
               
chr18:54687753-54687979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
37, 32
               

               
Conread position:
               
208-611
               

               
Cow position:
               
chr18:56267530-56267127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
44, 29
               

               
Conread position:
               
212-516
               

               
Cow position:
               
chr18:44944300-44944610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
60, 129
               

               
Conread position:
               
218-526
               

               
Cow position:
               
chr18:56391962-56391654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
219-657
               

               
Cow position:
               
chr18:54668838-54668400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
33, 22
               

               
Conread position:
               
222-655
               

               
Cow position:
               
chr18:56267600-56267167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
44, 35
               

               
Conread position:
               
243-431
               

               
Cow position:
               
chr18:54669624-54669436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
165, 172
               

               
Conread position:
               
249-526
               

               
Cow position:
               
chr18:44818609-44818886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
250-710
               

               
Cow position:
               
chr18:44817794-44818260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
22, 412
               

               
Conread position:
               
253-525
               

               
Cow position:
               
chr18:54664061-54664332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
257-655
               

               
Cow position:
               
chr18:40306232-40306630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
75, 57
               

               
Conread position:
               
259-558
               

               
Cow position:
               
chr18:55442331-55442630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
71, 65
               

               
Conread position:
               
260-576
               

               
Cow position:
               
chr18:50295254-50295570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
233, 240
               

               
Conread position:
               
276-681
               

               
Cow position:
               
chr18:22844371-22843963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
46, 54
               

               
Conread position:
               
293-874
               

               
Cow position:
               
chr18:49033367-49032781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
418, 479
               

               
Conread position:
               
301-610
               

               
Cow position:
               
chr18:56391963-56391654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
318-709
               

               
Cow position:
               
chr18:50281630-50282020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
84, 80
               

               
Conread position:
               
344-623
               

               
Cow position:
               
chr18:44818620-44818899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
58, 66
               

               
Conread position:
               
379-695
               

               
Cow position:
               
chr18:56391969-56391653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
288, 278
               

               
Conread position:
               
416-574
               

               
Cow position:
               
chr18:54669619-54669461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
418-656
               

               
Cow position:
               
chr18:53610495-53610257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
68, 63
               

               
Conread position:
               
444-644
               

               
Cow position:
               
chr18:54664083-54664283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.