Cow genome map
| Conread name: | Ss1.1-rece21c_c9.5 |
| Conread position: | 1-359 |
| Cow position: | chr21:12659645-12660003 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 237 |
| Conread position: | 3-274 |
| Cow position: | chr21:12608199-12607928 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 245, 249 |
| Conread position: | 3-578 |
| Cow position: | chr21:12608535-12607960 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 249 |
| Conread position: | 3-624 |
| Cow position: | chr21:12659395-12660016 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 235 |
| Conread position: | 3-655 |
| Cow position: | chr21:12608703-12608051 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 403, 407 |
| Conread position: | 3-655 |
| Cow position: | chr21:12608787-12608135 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 10 |
| Conread position: | 3-655 |
| Cow position: | chr21:12658891-12659543 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-655 |
| Cow position: | chr21:12659311-12659963 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-694 |
| Cow position: | chr21:12659059-12659750 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 235 |
| Conread position: | 4-544 |
| Cow position: | chr21:12659480-12660020 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-655 |
| Cow position: | chr21:12659228-12659879 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 386, 380 |
| Conread position: | 4-874 |
| Cow position: | chr21:12658976-12659851 (view UCSC Genome Browser custom track) |
| Alignm length: | 878 |
| Alignm identity: | 615 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 638, 632 |
| Conread position: | 7-655 |
| Cow position: | chr21:12608615-12607967 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 254 |
| Conread position: | 7-710 |
| Cow position: | chr21:12608867-12608165 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 6 |
| Conread position: | 8-453 |
| Cow position: | chr21:34222988-34222543 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 285 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 253, 241 |
| Conread position: | 26-874 |
| Cow position: | chr21:12658830-12659683 (view UCSC Genome Browser custom track) |
| Alignm length: | 857 |
| Alignm identity: | 591 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 29-537 |
| Cow position: | chr21:34223051-34222543 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 151 |
| Conread position: | 50-649 |
| Cow position: | chr21:12608908-12608309 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 285 |
| Conread position: | 52-446 |
| Cow position: | chr21:11852449-11852843 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 149, 107 |
| Conread position: | 81-649 |
| Cow position: | chr21:12658801-12659369 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 163 |
| Conread position: | 104-614 |
| Cow position: | chr21:11852333-11852843 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 308 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 59, 70 |
| Conread position: | 107-693 |
| Cow position: | chr21:11852253-11852838 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 354 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 77, 7 |
| Conread position: | 110-655 |
| Cow position: | chr21:34223135-34222593 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 24 |
| Conread position: | 113-624 |
| Cow position: | chr21:34223051-34222540 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 320 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 95, 100 |
| Conread position: | 127-655 |
| Cow position: | chr21:12608915-12608387 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 273 |
| Conread position: | 167-655 |
| Cow position: | chr21:12658803-12659291 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 85 |
| Conread position: | 499-683 |
| Cow position: | chr21:12658799-12658983 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 181, 165 |
Show alignments to all cow chromosomes.