Cow genome map
| Conread name: | Ss1.1-rece21c_c9.5 |
| Conread position: | 2-183 |
| Cow position: | chr4:65261327-65261146 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 74, 80 |
| Conread position: | 2-787 |
| Cow position: | chr4:65146645-65147433 (view UCSC Genome Browser custom track) |
| Alignm length: | 801 |
| Alignm identity: | 311 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 25, 43 |
| Conread position: | 5-535 |
| Cow position: | chr4:65494965-65494429 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 335 |
| Conread position: | 6-655 |
| Cow position: | chr4:65350106-65350752 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 156 |
| Conread position: | 7-190 |
| Cow position: | chr4:65546374-65546191 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 153, 162 |
| Conread position: | 7-371 |
| Cow position: | chr4:65261490-65261127 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 153, 165 |
| Conread position: | 7-486 |
| Cow position: | chr4:65121595-65122074 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 182 |
| Conread position: | 7-560 |
| Cow position: | chr4:65703521-65702968 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 162 |
| Conread position: | 8-285 |
| Cow position: | chr4:65146483-65146760 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 91, 97 |
| Conread position: | 8-373 |
| Cow position: | chr4:65702815-65702452 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 81, 96 |
| Conread position: | 8-644 |
| Cow position: | chr4:65703604-65702968 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 244 |
| Conread position: | 8-646 |
| Cow position: | chr4:65261822-65261187 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 36 |
| Conread position: | 19-373 |
| Cow position: | chr4:65121775-65122130 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 270, 265 |
| Conread position: | 19-574 |
| Cow position: | chr4:65261733-65261175 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 153 |
| Conread position: | 19-695 |
| Cow position: | chr4:65349783-65350459 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 221 |
| Conread position: | 20-168 |
| Cow position: | chr4:65121215-65121363 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 20-405 |
| Cow position: | chr4:65350372-65350754 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 111 |
| Conread position: | 20-436 |
| Cow position: | chr4:65261561-65261145 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 64 |
| Conread position: | 20-529 |
| Cow position: | chr4:65350288-65350794 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 62 |
| Conread position: | 20-603 |
| Cow position: | chr4:65350204-65350784 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 154 |
| Conread position: | 20-660 |
| Cow position: | chr4:65350036-65350673 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 25 |
| Conread position: | 21-262 |
| Cow position: | chr4:65121132-65121373 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-619 |
| Cow position: | chr4:65495032-65494429 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 222 |
| Conread position: | 22-655 |
| Cow position: | chr4:65703674-65703044 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 62 |
| Conread position: | 23-646 |
| Cow position: | chr4:65146414-65147040 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 384 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 220, 229 |
| Conread position: | 23-694 |
| Cow position: | chr4:65261888-65261223 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 60 |
| Conread position: | 25-441 |
| Cow position: | chr4:65702882-65702466 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 49, 57 |
| Conread position: | 29-386 |
| Cow position: | chr4:65157838-65158205 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 46, 55 |
| Conread position: | 43-570 |
| Cow position: | chr4:65121547-65122074 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 41 |
| Conread position: | 49-285 |
| Cow position: | chr4:65546416-65546181 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 55, 48 |
| Conread position: | 88-672 |
| Cow position: | chr4:65495323-65494712 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 81 |
| Conread position: | 91-521 |
| Cow position: | chr4:65702900-65702470 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 265 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 70, 86 |
| Conread position: | 95-369 |
| Cow position: | chr4:65546449-65546181 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 59, 12 |
| Conread position: | 105-336 |
| Cow position: | chr4:65121132-65121363 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 133, 147 |
| Conread position: | 109-717 |
| Cow position: | chr4:65495029-65494416 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 483 |
| Conread position: | 113-445 |
| Cow position: | chr4:65157838-65158179 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 236 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 45, 50 |
| Conread position: | 113-572 |
| Cow position: | chr4:65703667-65703208 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 52 |
| Conread position: | 128-654 |
| Cow position: | chr4:65121548-65122074 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 45 |
| Conread position: | 169-404 |
| Cow position: | chr4:65495326-65495091 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 159, 168 |
| Conread position: | 195-524 |
| Cow position: | chr4:65146418-65146751 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 55, 43 |
| Conread position: | 195-619 |
| Cow position: | chr4:65702880-65702458 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 47, 57 |
| Conread position: | 202-403 |
| Cow position: | chr4:65121145-65121346 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 122, 129 |
| Conread position: | 212-532 |
| Cow position: | chr4:65157853-65158182 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 31, 35 |
| Conread position: | 220-446 |
| Cow position: | chr4:65546413-65546187 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 52, 45 |
| Conread position: | 221-370 |
| Cow position: | chr4:65402065-65402214 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 26, 17 |
| Conread position: | 228-715 |
| Cow position: | chr4:65702934-65702444 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 291 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 28, 11 |
| Conread position: | 248-695 |
| Cow position: | chr4:65703616-65703169 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 80 |
| Conread position: | 263-530 |
| Cow position: | chr4:65546449-65546187 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 59, 12 |
| Conread position: | 273-532 |
| Cow position: | chr4:65121132-65121391 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 135, 142 |
| Conread position: | 276-610 |
| Cow position: | chr4:65157833-65158176 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 50, 55 |
| Conread position: | 291-694 |
| Cow position: | chr4:65121543-65121946 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 36, 44 |
| Conread position: | 337-575 |
| Cow position: | chr4:65495326-65495088 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 190, 204 |
| Conread position: | 346-610 |
| Cow position: | chr4:65146402-65146665 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 147, 16 |
| Conread position: | 361-598 |
| Cow position: | chr4:65121136-65121373 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 43, 54 |
| Conread position: | 361-610 |
| Cow position: | chr4:65546437-65546191 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 129, 5 |
| Conread position: | 365-665 |
| Cow position: | chr4:65157838-65158147 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 46, 50 |
| Conread position: | 371-515 |
| Cow position: | chr4:65402048-65402191 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 120, 7 |
| Conread position: | 430-694 |
| Cow position: | chr4:65146402-65146665 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 167, 14 |
| Conread position: | 455-646 |
| Cow position: | chr4:65121146-65121337 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 469-717 |
| Cow position: | chr4:65546416-65546168 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.