Cow genome map
| Conread name: | Ss1.1-rfbs3927b_n2.5 |
| Conread position: | 1-171 |
| Cow position: | chr1:55866691-55866865 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 89, 19 |
| Conread position: | 210-388 |
| Cow position: | chr1:55866837-55867012 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 15, 36 |
| Conread position: | 632-966 |
| Cow position: | chr1:43976583-43976254 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 230 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 20, 262 |
| Conread position: | 642-804 |
| Cow position: | chr1:68790067-68789901 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 645-952 |
| Cow position: | chr1:54987522-54987832 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 115, 58 |
| Conread position: | 647-963 |
| Cow position: | chr1:79915811-79915489 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 37, 63 |
| Conread position: | 651-855 |
| Cow position: | chr1:53020215-53020434 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 654-972 |
| Cow position: | chr1:63123167-63122860 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 19 |
| Conread position: | 655-965 |
| Cow position: | chr1:56440071-56439751 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 38, 13 |
| Conread position: | 656-968 |
| Cow position: | chr1:17478584-17478279 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 39, 60 |
| Conread position: | 657-943 |
| Cow position: | chr1:68593594-68593312 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 153, 55 |
| Conread position: | 657-947 |
| Cow position: | chr1:33538583-33538281 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 45, 38 |
| Conread position: | 658-838 |
| Cow position: | chr1:55867151-55867332 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 37, 96 |
| Conread position: | 658-896 |
| Cow position: | chr1:40967625-40967390 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 199, 17 |
| Conread position: | 658-919 |
| Cow position: | chr1:80620412-80620669 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 190 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 658-947 |
| Cow position: | chr1:57742739-57743022 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 146, 41 |
| Conread position: | 658-949 |
| Cow position: | chr1:88482901-88482603 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 37, 88 |
| Conread position: | 658-967 |
| Cow position: | chr1:50922744-50923076 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 91 |
| Conread position: | 658-968 |
| Cow position: | chr1:29791388-29791694 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 99 |
| Conread position: | 658-972 |
| Cow position: | chr1:5265807-5266123 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 13, 83 |
| Conread position: | 659-900 |
| Cow position: | chr1:15786083-15786320 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 659-942 |
| Cow position: | chr1:70035471-70035190 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 36, 60 |
| Conread position: | 659-942 |
| Cow position: | chr1:74545191-74545477 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 35, 62 |
| Conread position: | 659-942 |
| Cow position: | chr1:91059747-91059462 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 133, 36 |
| Conread position: | 659-953 |
| Cow position: | chr1:3667238-3667530 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 33, 22 |
| Conread position: | 659-963 |
| Cow position: | chr1:29605486-29605796 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 42, 22 |
| Conread position: | 660-933 |
| Cow position: | chr1:71453532-71453810 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 9, 47 |
| Conread position: | 660-952 |
| Cow position: | chr1:11408932-11408624 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 33, 49 |
| Conread position: | 660-967 |
| Cow position: | chr1:26624270-26624576 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 35 |
| Conread position: | 661-945 |
| Cow position: | chr1:40647065-40646777 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 91, 40 |
| Conread position: | 661-972 |
| Cow position: | chr1:9462978-9463284 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 84 |
| Conread position: | 661-972 |
| Cow position: | chr1:53648534-53648222 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 34, 86 |
| Conread position: | 662-785 |
| Cow position: | chr1:50961847-50961725 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 663-970 |
| Cow position: | chr1:40479102-40479408 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 664-952 |
| Cow position: | chr1:22774071-22774361 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 31, 92 |
| Conread position: | 667-899 |
| Cow position: | chr1:74754314-74754541 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 25, 71 |
| Conread position: | 667-957 |
| Cow position: | chr1:5215214-5215504 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 26, 39 |
| Conread position: | 667-966 |
| Cow position: | chr1:53781864-53781581 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 38, 28 |
| Conread position: | 669-889 |
| Cow position: | chr1:31121618-31121839 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 26, 138 |
| Conread position: | 669-925 |
| Cow position: | chr1:1940934-1941181 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 182, 85 |
| Conread position: | 673-953 |
| Cow position: | chr1:55153950-55154212 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 23, 50 |
| Conread position: | 674-952 |
| Cow position: | chr1:71121765-71121481 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 20, 35 |
| Conread position: | 688-970 |
| Cow position: | chr1:11210712-11210446 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 169, 11 |
| Conread position: | 702-972 |
| Cow position: | chr1:82569857-82569579 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 91, 145 |
| Conread position: | 705-869 |
| Cow position: | chr1:34945207-34945038 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 7, 49 |
| Conread position: | 709-967 |
| Cow position: | chr1:29431091-29430829 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 153, 51 |
| Conread position: | 715-942 |
| Cow position: | chr1:84778379-84778149 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 56, 38 |
| Conread position: | 724-917 |
| Cow position: | chr1:52162965-52163150 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 136, 30 |
| Conread position: | 739-921 |
| Cow position: | chr1:62424481-62424668 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 52, 121 |
| Conread position: | 739-972 |
| Cow position: | chr1:60086786-60086546 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 26, 13 |
| Conread position: | 778-972 |
| Cow position: | chr1:76223555-76223752 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 26, 184 |
| Conread position: | 797-972 |
| Cow position: | chr1:7631640-7631469 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 11, 42 |
| Conread position: | 798-951 |
| Cow position: | chr1:79133074-79132920 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 62, 129 |
| Conread position: | 815-964 |
| Cow position: | chr1:7376299-7376150 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 42, 89 |
| Conread position: | 821-956 |
| Cow position: | chr1:6798768-6798903 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 39, 94 |
| Conread position: | 823-970 |
| Cow position: | chr1:55867450-55867595 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 37, 130 |
| Conread position: | 833-971 |
| Cow position: | chr1:37306169-37306307 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 24, 124 |
| Conread position: | 833-972 |
| Cow position: | chr1:90298247-90298107 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
Show alignments to all cow chromosomes.