Cow genome map
| Conread name: | Ss1.1-rfbs3927b_n2.5 |
| Conread position: | 616-968 |
| Cow position: | chr10:8107326-8107702 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 41, 136 |
| Conread position: | 646-812 |
| Cow position: | chr10:50163848-50163675 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 49, 9 |
| Conread position: | 654-957 |
| Cow position: | chr10:26930633-26930945 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 41, 15 |
| Conread position: | 654-971 |
| Cow position: | chr10:29798568-29798253 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 39, 54 |
| Conread position: | 655-972 |
| Cow position: | chr10:29773536-29773207 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 14, 55 |
| Conread position: | 656-967 |
| Cow position: | chr10:10202998-10203311 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 13, 54 |
| Conread position: | 657-956 |
| Cow position: | chr10:53443291-53442986 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 36, 51 |
| Conread position: | 657-958 |
| Cow position: | chr10:44863881-44864186 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 259 |
| Conread position: | 658-839 |
| Cow position: | chr10:14649428-14649610 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 658-964 |
| Cow position: | chr10:58809466-58809774 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 43, 95 |
| Conread position: | 658-965 |
| Cow position: | chr10:52084228-52084524 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 119 |
| Conread position: | 658-970 |
| Cow position: | chr10:48479166-48479478 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 41, 56 |
| Conread position: | 658-971 |
| Cow position: | chr10:9343863-9343546 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 49, 40 |
| Conread position: | 659-936 |
| Cow position: | chr10:58230503-58230223 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 10, 181 |
| Conread position: | 659-957 |
| Cow position: | chr10:69941584-69941868 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 105, 38 |
| Conread position: | 659-961 |
| Cow position: | chr10:16522374-16522072 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 29, 15 |
| Conread position: | 659-967 |
| Cow position: | chr10:32897204-32896892 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 57, 79 |
| Conread position: | 660-874 |
| Cow position: | chr10:17841798-17841577 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 35, 152 |
| Conread position: | 660-878 |
| Cow position: | chr10:5031870-5032095 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 25, 93 |
| Conread position: | 660-914 |
| Cow position: | chr10:28076133-28076385 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 32, 79 |
| Conread position: | 660-916 |
| Cow position: | chr10:1610734-1610483 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 35, 139 |
| Conread position: | 660-922 |
| Cow position: | chr10:10957197-10957472 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 660-922 |
| Cow position: | chr10:57957507-57957774 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 196 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 10, 104 |
| Conread position: | 660-934 |
| Cow position: | chr10:5505592-5505870 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 12, 46 |
| Conread position: | 660-938 |
| Cow position: | chr10:57993651-57993939 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 35, 95 |
| Conread position: | 660-944 |
| Cow position: | chr10:36954146-36954433 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 660-968 |
| Cow position: | chr10:46561068-46561374 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 29, 16 |
| Conread position: | 661-972 |
| Cow position: | chr10:66172912-66173227 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 219 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 47, 34 |
| Conread position: | 663-839 |
| Cow position: | chr10:13590471-13590296 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 33, 96 |
| Conread position: | 663-896 |
| Cow position: | chr10:64163311-64163068 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 21, 95 |
| Conread position: | 666-948 |
| Cow position: | chr10:65263230-65262943 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 200 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 23, 41 |
| Conread position: | 666-972 |
| Cow position: | chr10:39052944-39052643 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 27, 77 |
| Conread position: | 667-895 |
| Cow position: | chr10:40420174-40419946 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 28, 47 |
| Conread position: | 667-966 |
| Cow position: | chr10:48223568-48223868 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 30 |
| Conread position: | 667-968 |
| Cow position: | chr10:882047-881748 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 27, 89 |
| Conread position: | 668-968 |
| Cow position: | chr10:28006869-28007173 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 25, 140 |
| Conread position: | 673-935 |
| Cow position: | chr10:29291450-29291183 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 22, 83 |
| Conread position: | 673-968 |
| Cow position: | chr10:4880050-4879750 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 22, 105 |
| Conread position: | 673-968 |
| Cow position: | chr10:4885823-4885523 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 22, 105 |
| Conread position: | 676-942 |
| Cow position: | chr10:57773935-57773662 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 19, 30 |
| Conread position: | 680-949 |
| Cow position: | chr10:55065666-55065940 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 17, 24 |
| Conread position: | 691-955 |
| Cow position: | chr10:32783653-32783925 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 74, 11 |
| Conread position: | 691-972 |
| Cow position: | chr10:11635713-11635416 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 122, 27 |
| Conread position: | 692-954 |
| Cow position: | chr10:66081583-66081834 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 167, 28 |
| Conread position: | 692-970 |
| Cow position: | chr10:28449237-28448966 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 168, 10 |
| Conread position: | 716-971 |
| Cow position: | chr10:33219248-33219504 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 24, 39 |
| Conread position: | 729-949 |
| Cow position: | chr10:16554622-16554407 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 95, 24 |
| Conread position: | 738-942 |
| Cow position: | chr10:24631702-24631499 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 121, 74 |
| Conread position: | 753-972 |
| Cow position: | chr10:17806465-17806238 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 12, 211 |
| Conread position: | 763-971 |
| Cow position: | chr10:14019496-14019710 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 41, 81 |
| Conread position: | 767-964 |
| Cow position: | chr10:46241838-46242034 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 90, 28 |
| Conread position: | 815-966 |
| Cow position: | chr10:23872405-23872553 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 45, 56 |
| Conread position: | 828-971 |
| Cow position: | chr10:17165493-17165637 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 32, 0 |
Show alignments to all cow chromosomes.