Cow genome map
| Conread name: | Ss1.1-rfbs3927b_n2.5 |
| Conread position: | 651-972 |
| Cow position: | chr11:23419252-23418944 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 211 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 209, 29 |
| Conread position: | 654-965 |
| Cow position: | chr11:61754436-61754136 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 210 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 206, 41 |
| Conread position: | 657-970 |
| Cow position: | chr11:25379288-25379604 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 22, 99 |
| Conread position: | 657-972 |
| Cow position: | chr11:35507097-35506785 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 36, 91 |
| Conread position: | 658-925 |
| Cow position: | chr11:17060372-17060111 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 104, 37 |
| Conread position: | 658-962 |
| Cow position: | chr11:35502318-35502634 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 31, 51 |
| Conread position: | 658-971 |
| Cow position: | chr11:47137485-47137801 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 21 |
| Conread position: | 658-972 |
| Cow position: | chr11:21544619-21544299 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 24, 52 |
| Conread position: | 658-972 |
| Cow position: | chr11:53306722-53307037 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 37, 111 |
| Conread position: | 659-972 |
| Cow position: | chr11:46035577-46035895 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 36, 93 |
| Conread position: | 660-944 |
| Cow position: | chr11:55464832-55465123 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 17, 37 |
| Conread position: | 660-964 |
| Cow position: | chr11:10887216-10886913 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 141, 23 |
| Conread position: | 660-964 |
| Cow position: | chr11:29532261-29531958 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 35, 64 |
| Conread position: | 660-972 |
| Cow position: | chr11:64315785-64316100 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 36, 283 |
| Conread position: | 661-937 |
| Cow position: | chr11:28747967-28748249 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 34, 12 |
| Conread position: | 661-966 |
| Cow position: | chr11:57864462-57864768 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 229 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 34, 16 |
| Conread position: | 664-972 |
| Cow position: | chr11:62040079-62040388 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 83, 31 |
| Conread position: | 667-953 |
| Cow position: | chr11:13954052-13954347 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 17, 49 |
| Conread position: | 667-957 |
| Cow position: | chr11:61205431-61205141 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 28, 39 |
| Conread position: | 667-966 |
| Cow position: | chr11:78705920-78705628 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 99, 86 |
| Conread position: | 667-971 |
| Cow position: | chr11:80809404-80809716 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 26, 89 |
| Conread position: | 667-972 |
| Cow position: | chr11:74215974-74216283 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 26, 42 |
| Conread position: | 668-922 |
| Cow position: | chr11:2813413-2813160 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 27, 41 |
| Conread position: | 673-964 |
| Cow position: | chr11:47104040-47104336 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 22, 82 |
| Conread position: | 674-966 |
| Cow position: | chr11:54094457-54094166 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 19, 57 |
| Conread position: | 691-947 |
| Cow position: | chr11:370459-370196 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 67, 12 |
| Conread position: | 691-970 |
| Cow position: | chr11:39192647-39192919 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 101 |
| Conread position: | 694-954 |
| Cow position: | chr11:18489436-18489702 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 58, 8 |
| Conread position: | 710-971 |
| Cow position: | chr11:32269447-32269707 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 109, 63 |
| Conread position: | 735-935 |
| Cow position: | chr11:25531453-25531645 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 122, 75 |
| Conread position: | 741-972 |
| Cow position: | chr11:65022767-65022541 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 69, 17 |
| Conread position: | 779-972 |
| Cow position: | chr11:55354246-55354439 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 81, 36 |
| Conread position: | 780-962 |
| Cow position: | chr11:18293775-18293591 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 23, 174 |
| Conread position: | 798-972 |
| Cow position: | chr11:59003573-59003747 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 62, 151 |
| Conread position: | 805-967 |
| Cow position: | chr11:68476432-68476597 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 52, 139 |
| Conread position: | 817-953 |
| Cow position: | chr11:57815619-57815756 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 820-966 |
| Cow position: | chr11:68750573-68750716 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 69, 36 |
Show alignments to all cow chromosomes.