Cow genome map
| Conread name: | Ss1.1-rfbs3927b_n2.5 |
| Conread position: | 651-966 |
| Cow position: | chr13:30281384-30281055 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 27, 57 |
| Conread position: | 655-936 |
| Cow position: | chr13:42059318-42059038 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 208 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 38, 100 |
| Conread position: | 658-952 |
| Cow position: | chr13:1725869-1725572 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 31, 12 |
| Conread position: | 658-968 |
| Cow position: | chr13:1640244-1639945 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 230 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 37, 99 |
| Conread position: | 658-972 |
| Cow position: | chr13:10379441-10379760 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 67 |
| Conread position: | 659-954 |
| Cow position: | chr13:38352984-38352701 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 659-962 |
| Cow position: | chr13:4706141-4706448 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 36, 122 |
| Conread position: | 659-970 |
| Cow position: | chr13:52833233-52833563 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 47, 36 |
| Conread position: | 659-971 |
| Cow position: | chr13:179759-179446 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 106, 14 |
| Conread position: | 659-972 |
| Cow position: | chr13:47287599-47287267 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 34, 70 |
| Conread position: | 660-911 |
| Cow position: | chr13:510915-511164 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 23, 91 |
| Conread position: | 660-964 |
| Cow position: | chr13:2790966-2790660 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 47, 79 |
| Conread position: | 661-926 |
| Cow position: | chr13:53872142-53871876 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 199 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 103, 20 |
| Conread position: | 661-964 |
| Cow position: | chr13:7000345-7000038 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 34, 20 |
| Conread position: | 662-958 |
| Cow position: | chr13:53935149-53934855 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 24, 44 |
| Conread position: | 663-972 |
| Cow position: | chr13:9131043-9131351 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 221 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 26, 236 |
| Conread position: | 667-942 |
| Cow position: | chr13:11522749-11523023 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 24, 40 |
| Conread position: | 678-968 |
| Cow position: | chr13:3800613-3800324 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 75, 51 |
| Conread position: | 688-954 |
| Cow position: | chr13:20490057-20490322 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 77, 17 |
| Conread position: | 691-966 |
| Cow position: | chr13:52078074-52077794 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 61, 120 |
| Conread position: | 705-948 |
| Cow position: | chr13:9716477-9716230 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 65, 48 |
| Conread position: | 714-964 |
| Cow position: | chr13:11570456-11570711 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 51, 70 |
| Conread position: | 733-962 |
| Cow position: | chr13:28844436-28844665 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 74, 22 |
| Conread position: | 739-946 |
| Cow position: | chr13:20837850-20838056 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 51, 15 |
| Conread position: | 790-954 |
| Cow position: | chr13:60903045-60903207 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 67, 13 |
| Conread position: | 805-953 |
| Cow position: | chr13:11252139-11252283 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 55, 14 |
| Conread position: | 815-971 |
| Cow position: | chr13:24546963-24547117 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 65 |
| Conread position: | 819-938 |
| Cow position: | chr13:15705855-15705734 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 825-971 |
| Cow position: | chr13:8498821-8498678 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 32, 13 |
Show alignments to all cow chromosomes.