Cow genome map
| Conread name: | Ss1.1-rfbs3927b_n2.5 |
| Conread position: | 637-849 |
| Cow position: | chr15:38003485-38003690 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 30, 14 |
| Conread position: | 642-791 |
| Cow position: | chr15:41472649-41472801 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 9, 122 |
| Conread position: | 645-945 |
| Cow position: | chr15:47339772-47340092 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 234 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 48, 99 |
| Conread position: | 649-972 |
| Cow position: | chr15:31883294-31882965 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 44, 59 |
| Conread position: | 658-817 |
| Cow position: | chr15:5290797-5290960 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 658-952 |
| Cow position: | chr15:3593190-3593492 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 36, 90 |
| Conread position: | 658-966 |
| Cow position: | chr15:9734762-9735082 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 184 |
| Conread position: | 658-971 |
| Cow position: | chr15:45729225-45729542 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 218 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 31, 66 |
| Conread position: | 658-972 |
| Cow position: | chr15:41303537-41303215 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 43, 75 |
| Conread position: | 659-889 |
| Cow position: | chr15:15668953-15668717 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 184 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 30, 69 |
| Conread position: | 659-971 |
| Cow position: | chr15:21341525-21341826 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 177, 127 |
| Conread position: | 660-952 |
| Cow position: | chr15:22155727-22155444 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 29, 64 |
| Conread position: | 660-953 |
| Cow position: | chr15:43007279-43007586 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 35, 193 |
| Conread position: | 661-964 |
| Cow position: | chr15:5653552-5653871 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 237 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 34, 108 |
| Conread position: | 661-972 |
| Cow position: | chr15:24153126-24153439 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 32, 97 |
| Conread position: | 663-809 |
| Cow position: | chr15:6642857-6643000 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 665-971 |
| Cow position: | chr15:2797627-2797938 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 100, 30 |
| Conread position: | 667-874 |
| Cow position: | chr15:15644320-15644533 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 28, 91 |
| Conread position: | 673-965 |
| Cow position: | chr15:28153194-28153487 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 84 |
| Conread position: | 673-972 |
| Cow position: | chr15:22452716-22452408 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 20, 83 |
| Conread position: | 675-947 |
| Cow position: | chr15:40991740-40991464 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 20, 30 |
| Conread position: | 680-972 |
| Cow position: | chr15:39580761-39580481 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 208 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 681-937 |
| Cow position: | chr15:43932424-43932160 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 22, 17 |
| Conread position: | 691-952 |
| Cow position: | chr15:7667968-7668240 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 101, 11 |
| Conread position: | 691-972 |
| Cow position: | chr15:19838884-19839164 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 202 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 74, 12 |
| Conread position: | 692-919 |
| Cow position: | chr15:19810950-19811173 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 125, 61 |
| Conread position: | 705-968 |
| Cow position: | chr15:23273127-23273401 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 63, 48 |
| Conread position: | 708-971 |
| Cow position: | chr15:13056891-13057157 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 25 |
| Conread position: | 761-958 |
| Cow position: | chr15:31978419-31978217 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 797-968 |
| Cow position: | chr15:24098579-24098412 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 80, 22 |
| Conread position: | 803-933 |
| Cow position: | chr15:46468040-46468170 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.