Cow genome map
| Conread name: | Ss1.1-rfbs3927b_n2.5 |
| Conread position: | 645-971 |
| Cow position: | chr16:5455357-5455694 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 220 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 30, 149 |
| Conread position: | 652-963 |
| Cow position: | chr16:49913089-49913400 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 51, 174 |
| Conread position: | 654-964 |
| Cow position: | chr16:21138636-21138324 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 41, 52 |
| Conread position: | 654-972 |
| Cow position: | chr16:16754401-16754724 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 15, 193 |
| Conread position: | 657-972 |
| Cow position: | chr16:50519980-50519673 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 38, 186 |
| Conread position: | 657-972 |
| Cow position: | chr16:51196342-51196655 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 110 |
| Conread position: | 658-869 |
| Cow position: | chr16:45232489-45232283 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 199, 73 |
| Conread position: | 658-932 |
| Cow position: | chr16:36352062-36352333 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 36, 47 |
| Conread position: | 658-942 |
| Cow position: | chr16:10659569-10659277 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 26, 43 |
| Conread position: | 658-961 |
| Cow position: | chr16:55439973-55440248 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 199, 39 |
| Conread position: | 658-970 |
| Cow position: | chr16:5605491-5605807 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 46, 93 |
| Conread position: | 659-968 |
| Cow position: | chr16:25894746-25894437 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 17, 30 |
| Conread position: | 661-808 |
| Cow position: | chr16:7568664-7568518 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 139, 20 |
| Conread position: | 661-963 |
| Cow position: | chr16:46797320-46797037 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 198, 78 |
| Conread position: | 661-972 |
| Cow position: | chr16:43843136-43843456 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 32, 94 |
| Conread position: | 661-972 |
| Cow position: | chr16:44666853-44667162 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 19, 46 |
| Conread position: | 663-931 |
| Cow position: | chr16:12038677-12038960 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 30, 80 |
| Conread position: | 663-953 |
| Cow position: | chr16:51416448-51416747 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 111, 275 |
| Conread position: | 664-881 |
| Cow position: | chr16:56164651-56164426 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 31, 93 |
| Conread position: | 664-972 |
| Cow position: | chr16:12020975-12020675 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 30, 67 |
| Conread position: | 665-971 |
| Cow position: | chr16:25021363-25021668 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 221 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 156, 197 |
| Conread position: | 666-966 |
| Cow position: | chr16:38179014-38178704 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 206 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 27, 43 |
| Conread position: | 667-966 |
| Cow position: | chr16:16918331-16918639 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 28, 184 |
| Conread position: | 669-896 |
| Cow position: | chr16:40233438-40233197 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 47, 189 |
| Conread position: | 673-957 |
| Cow position: | chr16:15974809-15975097 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 205 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 22, 33 |
| Conread position: | 691-858 |
| Cow position: | chr16:51481835-51481671 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 118, 63 |
| Conread position: | 720-972 |
| Cow position: | chr16:50660534-50660791 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 88, 28 |
| Conread position: | 763-954 |
| Cow position: | chr16:45727689-45727506 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 96, 56 |
| Conread position: | 764-967 |
| Cow position: | chr16:47887663-47887864 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 29, 48 |
| Conread position: | 776-972 |
| Cow position: | chr16:50348688-50348487 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 32, 188 |
| Conread position: | 805-971 |
| Cow position: | chr16:26669081-26668921 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 19, 0 |
Show alignments to all cow chromosomes.