Cow genome map
| Conread name: | Ss1.1-rfbs3927b_n2.5 |
| Conread position: | 652-871 |
| Cow position: | chr17:3889842-3890066 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 42, 108 |
| Conread position: | 655-829 |
| Cow position: | chr17:12479194-12479011 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 656-785 |
| Cow position: | chr17:30414526-30414399 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 102, 39 |
| Conread position: | 658-964 |
| Cow position: | chr17:17652508-17652197 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 37, 119 |
| Conread position: | 659-945 |
| Cow position: | chr17:9348954-9348659 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 30, 97 |
| Conread position: | 659-956 |
| Cow position: | chr17:19366650-19366351 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 21, 46 |
| Conread position: | 659-964 |
| Cow position: | chr17:39208395-39208700 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 30, 22 |
| Conread position: | 659-966 |
| Cow position: | chr17:17085351-17085670 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 78, 39 |
| Conread position: | 660-904 |
| Cow position: | chr17:24560125-24559875 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 108, 94 |
| Conread position: | 661-915 |
| Cow position: | chr17:15115738-15115471 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 34, 64 |
| Conread position: | 661-967 |
| Cow position: | chr17:17273795-17274101 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 226 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 34, 60 |
| Conread position: | 667-952 |
| Cow position: | chr17:7423166-7423458 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 19, 41 |
| Conread position: | 673-953 |
| Cow position: | chr17:17134815-17134529 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 24, 59 |
| Conread position: | 673-972 |
| Cow position: | chr17:16414562-16414857 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 33, 81 |
| Conread position: | 686-966 |
| Cow position: | chr17:10321102-10321388 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 83, 12 |
| Conread position: | 693-972 |
| Cow position: | chr17:19404197-19404469 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 107, 42 |
| Conread position: | 706-909 |
| Cow position: | chr17:17155668-17155870 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 84, 48 |
| Conread position: | 790-966 |
| Cow position: | chr17:34889600-34889424 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 28, 60 |
Show alignments to all cow chromosomes.