Cow genome map
| Conread name: | Ss1.1-rfbs3927b_n2.5 |
| Conread position: | 644-972 |
| Cow position: | chr29:24615683-24615362 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 216, 115 |
| Conread position: | 652-942 |
| Cow position: | chr29:24778603-24778893 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 122, 43 |
| Conread position: | 656-966 |
| Cow position: | chr29:29137913-29138232 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 37, 100 |
| Conread position: | 658-797 |
| Cow position: | chr29:24021078-24020939 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 658-966 |
| Cow position: | chr29:40548033-40547729 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 35, 49 |
| Conread position: | 659-947 |
| Cow position: | chr29:9852094-9852394 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 98 |
| Conread position: | 660-968 |
| Cow position: | chr29:7828177-7828488 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 11, 36 |
| Conread position: | 661-935 |
| Cow position: | chr29:33010076-33009799 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 104, 77 |
| Conread position: | 661-968 |
| Cow position: | chr29:4890344-4890655 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 81 |
| Conread position: | 661-971 |
| Cow position: | chr29:37709719-37710007 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 226 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 662-972 |
| Cow position: | chr29:18692844-18693152 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 31, 42 |
| Conread position: | 667-972 |
| Cow position: | chr29:22247341-22247661 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 26, 39 |
| Conread position: | 673-895 |
| Cow position: | chr29:14601792-14601559 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 680-938 |
| Cow position: | chr29:21263233-21263491 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 6, 26 |
| Conread position: | 706-877 |
| Cow position: | chr29:3185340-3185510 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 149, 54 |
| Conread position: | 715-972 |
| Cow position: | chr29:36037039-36037296 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 64, 114 |
| Conread position: | 720-968 |
| Cow position: | chr29:23908890-23908634 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 71, 147 |
| Conread position: | 724-972 |
| Cow position: | chr29:6013949-6013697 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 44, 36 |
| Conread position: | 733-968 |
| Cow position: | chr29:26423660-26423903 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 74, 216 |
| Conread position: | 795-972 |
| Cow position: | chr29:18719867-18720046 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 797-971 |
| Cow position: | chr29:4221502-4221327 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 800-972 |
| Cow position: | chr29:38620543-38620716 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 160 |
| Conread position: | 829-966 |
| Cow position: | chr29:4261460-4261323 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 31, 131 |
Show alignments to all cow chromosomes.