Cow genome map
| Conread name: | Ss1.1-rfbs3927b_n2.5 |
| Conread position: | 644-911 |
| Cow position: | chr3:41316521-41316239 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 14, 272 |
| Conread position: | 651-966 |
| Cow position: | chr3:80138508-80138827 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 216 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 38, 18 |
| Conread position: | 654-934 |
| Cow position: | chr3:64184977-64184690 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 9, 40 |
| Conread position: | 656-936 |
| Cow position: | chr3:1750700-1750400 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 39, 12 |
| Conread position: | 656-971 |
| Cow position: | chr3:73813083-73812749 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 242 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 37, 14 |
| Conread position: | 657-882 |
| Cow position: | chr3:11653534-11653774 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 658-885 |
| Cow position: | chr3:16867601-16867824 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 134, 42 |
| Conread position: | 658-921 |
| Cow position: | chr3:78171705-78171967 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 164, 61 |
| Conread position: | 658-942 |
| Cow position: | chr3:13259235-13259520 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 50, 81 |
| Conread position: | 658-966 |
| Cow position: | chr3:37288971-37289290 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 234 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 32, 241 |
| Conread position: | 660-876 |
| Cow position: | chr3:42137184-42136967 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 116, 103 |
| Conread position: | 660-945 |
| Cow position: | chr3:37106435-37106723 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 35, 79 |
| Conread position: | 660-956 |
| Cow position: | chr3:30788608-30788904 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 193 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 10, 49 |
| Conread position: | 660-970 |
| Cow position: | chr3:54779636-54779335 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 227 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 62, 135 |
| Conread position: | 661-948 |
| Cow position: | chr3:71514593-71514868 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 104, 50 |
| Conread position: | 661-968 |
| Cow position: | chr3:40658798-40659102 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 34 |
| Conread position: | 663-968 |
| Cow position: | chr3:34463925-34464241 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 234 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 26, 79 |
| Conread position: | 666-942 |
| Cow position: | chr3:19559692-19559974 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 27, 43 |
| Conread position: | 667-948 |
| Cow position: | chr3:66614235-66614519 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 27, 74 |
| Conread position: | 668-965 |
| Cow position: | chr3:26659086-26659378 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 64 |
| Conread position: | 673-947 |
| Cow position: | chr3:6188813-6188535 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 92, 29 |
| Conread position: | 674-972 |
| Cow position: | chr3:31924379-31924674 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 23, 82 |
| Conread position: | 675-934 |
| Cow position: | chr3:6092347-6092619 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 676-938 |
| Cow position: | chr3:41157116-41157377 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 195 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 20, 74 |
| Conread position: | 680-919 |
| Cow position: | chr3:40853270-40853031 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 184 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 122, 60 |
| Conread position: | 688-946 |
| Cow position: | chr3:16169804-16170062 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 83, 15 |
| Conread position: | 691-849 |
| Cow position: | chr3:8852665-8852506 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 74, 11 |
| Conread position: | 691-968 |
| Cow position: | chr3:2054563-2054289 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 102, 28 |
| Conread position: | 701-972 |
| Cow position: | chr3:76931140-76931430 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 116, 208 |
| Conread position: | 702-972 |
| Cow position: | chr3:69419700-69419978 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 44, 162 |
| Conread position: | 704-965 |
| Cow position: | chr3:24846372-24846107 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 196 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 17, 51 |
| Conread position: | 712-962 |
| Cow position: | chr3:56565643-56565391 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 62, 41 |
| Conread position: | 714-941 |
| Cow position: | chr3:10214848-10215075 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 45, 64 |
| Conread position: | 715-954 |
| Cow position: | chr3:25803353-25803107 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 55, 38 |
| Conread position: | 721-933 |
| Cow position: | chr3:11790300-11790077 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 16, 82 |
| Conread position: | 738-971 |
| Cow position: | chr3:1350245-1350019 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 119, 16 |
| Conread position: | 768-971 |
| Cow position: | chr3:18855873-18855674 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 54, 34 |
| Conread position: | 804-968 |
| Cow position: | chr3:3283174-3283337 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 815-954 |
| Cow position: | chr3:48498618-48498757 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 42, 117 |
| Conread position: | 819-971 |
| Cow position: | chr3:73294559-73294403 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
Show alignments to all cow chromosomes.