Cow genome map
| Conread name: | Ss1.1-rfbs3927b_n2.5 |
| Conread position: | 645-967 |
| Cow position: | chr4:5499501-5499170 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 47, 13 |
| Conread position: | 645-970 |
| Cow position: | chr4:54106930-54107252 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 11 |
| Conread position: | 651-968 |
| Cow position: | chr4:58195001-58194684 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 212 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 654-899 |
| Cow position: | chr4:44737922-44737667 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 35, 70 |
| Conread position: | 655-942 |
| Cow position: | chr4:27547631-27547917 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 40, 100 |
| Conread position: | 657-963 |
| Cow position: | chr4:13919842-13920151 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 38, 24 |
| Conread position: | 657-966 |
| Cow position: | chr4:7584370-7584049 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 658-945 |
| Cow position: | chr4:34535090-34535354 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 42, 62 |
| Conread position: | 658-964 |
| Cow position: | chr4:38938614-38938905 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 228 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 38, 130 |
| Conread position: | 658-966 |
| Cow position: | chr4:7879080-7879375 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 232 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 37, 58 |
| Conread position: | 659-958 |
| Cow position: | chr4:53970569-53970268 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 27, 61 |
| Conread position: | 659-964 |
| Cow position: | chr4:43753446-43753120 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 86, 60 |
| Conread position: | 659-972 |
| Cow position: | chr4:2113907-2114213 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 106, 38 |
| Conread position: | 660-953 |
| Cow position: | chr4:30815328-30815033 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 149, 35 |
| Conread position: | 660-967 |
| Cow position: | chr4:5557571-5557252 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 35, 101 |
| Conread position: | 660-971 |
| Cow position: | chr4:3245232-3244923 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 150, 43 |
| Conread position: | 661-965 |
| Cow position: | chr4:30489025-30488717 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 9, 96 |
| Conread position: | 661-972 |
| Cow position: | chr4:46280320-46280632 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 238 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 34, 97 |
| Conread position: | 662-954 |
| Cow position: | chr4:42365981-42366265 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 33, 67 |
| Conread position: | 662-956 |
| Cow position: | chr4:6803645-6803346 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 51 |
| Conread position: | 667-836 |
| Cow position: | chr4:59613712-59613546 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 125, 103 |
| Conread position: | 667-874 |
| Cow position: | chr4:31599376-31599166 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 41 |
| Conread position: | 667-928 |
| Cow position: | chr4:10579470-10579206 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 26, 90 |
| Conread position: | 670-954 |
| Cow position: | chr4:48504069-48503789 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 122, 25 |
| Conread position: | 674-957 |
| Cow position: | chr4:33294771-33295051 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 21, 82 |
| Conread position: | 676-969 |
| Cow position: | chr4:7334158-7333861 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 123, 207 |
| Conread position: | 678-962 |
| Cow position: | chr4:46151221-46151511 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 92, 25 |
| Conread position: | 690-972 |
| Cow position: | chr4:20291231-20290949 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 81, 15 |
| Conread position: | 691-927 |
| Cow position: | chr4:40364698-40364927 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 74, 12 |
| Conread position: | 691-971 |
| Cow position: | chr4:30049034-30048761 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 104, 82 |
| Conread position: | 693-964 |
| Cow position: | chr4:44683951-44684223 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 200 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 115, 87 |
| Conread position: | 699-951 |
| Cow position: | chr4:21570882-21571143 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 78, 64 |
| Conread position: | 704-967 |
| Cow position: | chr4:30196441-30196709 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 96, 49 |
| Conread position: | 720-965 |
| Cow position: | chr4:52013509-52013267 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 49, 7 |
| Conread position: | 721-961 |
| Cow position: | chr4:29037483-29037241 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 6, 43 |
| Conread position: | 739-901 |
| Cow position: | chr4:8188681-8188843 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 66, 6 |
| Conread position: | 799-972 |
| Cow position: | chr4:5916285-5916114 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 61, 17 |
| Conread position: | 804-956 |
| Cow position: | chr4:59884190-59884345 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 19, 64 |
| Conread position: | 823-970 |
| Cow position: | chr4:32813417-32813565 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 37, 133 |
| Conread position: | 828-968 |
| Cow position: | chr4:26985388-26985252 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 33, 52 |
| Conread position: | 829-961 |
| Cow position: | chr4:32838430-32838560 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 94, 26 |
Show alignments to all cow chromosomes.