Cow genome map
| Conread name: | Ss1.1-rfbs3927b_n2.5 |
| Conread position: | 652-906 |
| Cow position: | chr5:57950795-57951040 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 63, 34 |
| Conread position: | 655-953 |
| Cow position: | chr5:37669165-37668857 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 11, 239 |
| Conread position: | 656-916 |
| Cow position: | chr5:13555998-13555737 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 37, 19 |
| Conread position: | 656-971 |
| Cow position: | chr5:8985423-8985739 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 33, 50 |
| Conread position: | 657-949 |
| Cow position: | chr5:40866211-40865919 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 12, 59 |
| Conread position: | 658-933 |
| Cow position: | chr5:9675283-9675564 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 107, 33 |
| Conread position: | 659-810 |
| Cow position: | chr5:60902498-60902344 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 30, 98 |
| Conread position: | 659-944 |
| Cow position: | chr5:11954049-11954321 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 106, 95 |
| Conread position: | 661-927 |
| Cow position: | chr5:38927081-38927354 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 202 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 34, 136 |
| Conread position: | 661-970 |
| Cow position: | chr5:41651888-41652198 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 35, 42 |
| Conread position: | 662-790 |
| Cow position: | chr5:47744002-47743873 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 662-810 |
| Cow position: | chr5:15616831-15616976 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 102, 34 |
| Conread position: | 662-953 |
| Cow position: | chr5:13940748-13941047 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 40 |
| Conread position: | 664-839 |
| Cow position: | chr5:28881161-28880980 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 44, 31 |
| Conread position: | 666-968 |
| Cow position: | chr5:34565426-34565732 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 121, 59 |
| Conread position: | 667-953 |
| Cow position: | chr5:49133768-49133484 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 46, 28 |
| Conread position: | 667-972 |
| Cow position: | chr5:64793978-64793668 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 28, 45 |
| Conread position: | 668-946 |
| Cow position: | chr5:32058549-32058265 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 213 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 27, 85 |
| Conread position: | 668-968 |
| Cow position: | chr5:56273748-56274050 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 86 |
| Conread position: | 674-937 |
| Cow position: | chr5:55079256-55078987 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 16, 82 |
| Conread position: | 674-947 |
| Cow position: | chr5:45567576-45567300 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 15, 83 |
| Conread position: | 678-966 |
| Cow position: | chr5:46756126-46755835 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 12, 25 |
| Conread position: | 683-899 |
| Cow position: | chr5:70868234-70868016 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 688-966 |
| Cow position: | chr5:22648407-22648117 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 88, 51 |
| Conread position: | 691-971 |
| Cow position: | chr5:48834324-48834046 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 74, 8 |
| Conread position: | 699-811 |
| Cow position: | chr5:19360913-19360801 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 704-965 |
| Cow position: | chr5:59510500-59510232 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 61, 49 |
| Conread position: | 705-911 |
| Cow position: | chr5:29570770-29570973 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 114, 21 |
| Conread position: | 706-972 |
| Cow position: | chr5:35528791-35528531 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 64, 13 |
| Conread position: | 707-964 |
| Cow position: | chr5:35262690-35262431 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 96, 139 |
| Conread position: | 768-970 |
| Cow position: | chr5:38380317-38380112 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 108 |
| Conread position: | 768-972 |
| Cow position: | chr5:12840328-12840535 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 92, 19 |
| Conread position: | 774-972 |
| Cow position: | chr5:66166946-66166748 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 34, 127 |
| Conread position: | 793-956 |
| Cow position: | chr5:23722704-23722868 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 797-964 |
| Cow position: | chr5:60187024-60186858 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 63, 131 |
| Conread position: | 807-963 |
| Cow position: | chr5:61354741-61354898 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 9, 151 |
| Conread position: | 818-964 |
| Cow position: | chr5:22069228-22069082 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 44, 142 |
| Conread position: | 837-967 |
| Cow position: | chr5:28878992-28878861 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 20, 57 |
Show alignments to all cow chromosomes.