Cow genome map
| Conread name: | Ss1.1-rfbs3927b_n2.5 |
| Conread position: | 645-966 |
| Cow position: | chr6:6055054-6054734 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 234 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 50, 13 |
| Conread position: | 645-971 |
| Cow position: | chr6:30499457-30499121 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 46, 22 |
| Conread position: | 650-949 |
| Cow position: | chr6:55387624-55387322 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 7 |
| Conread position: | 655-972 |
| Cow position: | chr6:45923913-45923609 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 205, 47 |
| Conread position: | 657-972 |
| Cow position: | chr6:6124511-6124191 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 48 |
| Conread position: | 658-867 |
| Cow position: | chr6:31941949-31941729 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 658-964 |
| Cow position: | chr6:38382748-38383061 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 25, 45 |
| Conread position: | 658-968 |
| Cow position: | chr6:17739735-17740054 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 33, 166 |
| Conread position: | 658-971 |
| Cow position: | chr6:52188516-52188849 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 39, 98 |
| Conread position: | 659-964 |
| Cow position: | chr6:56091209-56090894 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 311 |
| Conread position: | 660-901 |
| Cow position: | chr6:1683951-1684176 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 12, 57 |
| Conread position: | 660-926 |
| Cow position: | chr6:12976898-12976619 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 43, 35 |
| Conread position: | 660-951 |
| Cow position: | chr6:20407192-20406890 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 33, 49 |
| Conread position: | 660-954 |
| Cow position: | chr6:19441149-19440857 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 35, 46 |
| Conread position: | 661-808 |
| Cow position: | chr6:69190482-69190336 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 661-937 |
| Cow position: | chr6:27991958-27992229 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 103, 34 |
| Conread position: | 662-957 |
| Cow position: | chr6:15664928-15665224 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 96 |
| Conread position: | 662-972 |
| Cow position: | chr6:22193100-22193413 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 103, 41 |
| Conread position: | 666-972 |
| Cow position: | chr6:35120986-35121287 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 29 |
| Conread position: | 667-961 |
| Cow position: | chr6:19748228-19748540 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 22, 38 |
| Conread position: | 673-968 |
| Cow position: | chr6:16236431-16236732 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 144 |
| Conread position: | 674-942 |
| Cow position: | chr6:6164944-6164668 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 23, 86 |
| Conread position: | 674-964 |
| Cow position: | chr6:2404503-2404797 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 15, 53 |
| Conread position: | 678-971 |
| Cow position: | chr6:19144700-19144990 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 12, 25 |
| Conread position: | 680-954 |
| Cow position: | chr6:47215336-47215053 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 83, 15 |
| Conread position: | 682-967 |
| Cow position: | chr6:30945757-30946041 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 13, 74 |
| Conread position: | 689-879 |
| Cow position: | chr6:20813082-20813277 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 118, 53 |
| Conread position: | 694-972 |
| Cow position: | chr6:43764090-43763798 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 160 |
| Conread position: | 701-931 |
| Cow position: | chr6:66360645-66360414 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 64, 19 |
| Conread position: | 738-971 |
| Cow position: | chr6:17627274-17627514 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 54, 16 |
| Conread position: | 779-972 |
| Cow position: | chr6:39954863-39954667 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 78, 13 |
| Conread position: | 791-953 |
| Cow position: | chr6:64254859-64254704 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 66, 123 |
| Conread position: | 816-971 |
| Cow position: | chr6:8930953-8931108 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 44, 96 |
Show alignments to all cow chromosomes.