Cow genome map

Conread name: Ss1.1-rfbs3927b_n2.5

Conread position: 634-954
Cow position: chr8:41411831-41411523 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 214
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 61, 20

Conread position: 649-942
Cow position: chr8:42818126-42817834 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 109

Conread position: 649-972
Cow position: chr8:59061953-59061616 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 227
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 20, 59

Conread position: 654-963
Cow position: chr8:16757139-16757451 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 210
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 41, 13

Conread position: 655-916
Cow position: chr8:25378515-25378770 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 188
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 26, 142

Conread position: 657-972
Cow position: chr8:42120006-42120320 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 206
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 32, 16

Conread position: 658-961
Cow position: chr8:51442977-51443279 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 208
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 31, 48

Conread position: 658-968
Cow position: chr8:18908376-18908069 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 207
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 112, 16

Conread position: 658-972
Cow position: chr8:24476851-24477165 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 152

Conread position: 659-942
Cow position: chr8:42135111-42135377 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 203
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 198, 14

Conread position: 659-945
Cow position: chr8:46280146-46279855 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 206
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 147, 271

Conread position: 659-964
Cow position: chr8:27558110-27558410 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 221
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 157, 43

Conread position: 659-971
Cow position: chr8:54157270-54156970 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 225
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 105, 44

Conread position: 659-972
Cow position: chr8:9314334-9314021 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 214
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 12, 57

Conread position: 660-964
Cow position: chr8:26877725-26877408 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 225
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 24, 71

Conread position: 661-905
Cow position: chr8:4285587-4285836 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 187
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 26, 92

Conread position: 661-934
Cow position: chr8:11860478-11860757 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 198
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 147, 35

Conread position: 661-971
Cow position: chr8:23329641-23329332 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 219
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 8, 48

Conread position: 663-891
Cow position: chr8:18387373-18387622 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 184
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 30, 0

Conread position: 664-959
Cow position: chr8:7546706-7547006 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 210
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 18, 209

Conread position: 664-968
Cow position: chr8:60323982-60324283 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 221
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 29, 83

Conread position: 664-972
Cow position: chr8:15516387-15516079 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 217
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 31, 94

Conread position: 667-955
Cow position: chr8:36608468-36608763 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 200
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 41, 28

Conread position: 667-964
Cow position: chr8:49684420-49684115 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 217
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 28, 90

Conread position: 667-972
Cow position: chr8:37691900-37691583 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 220
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 26, 57

Conread position: 674-810
Cow position: chr8:13929356-13929215 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 674-964
Cow position: chr8:59472608-59472898 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 199
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 15, 81

Conread position: 687-972
Cow position: chr8:8723874-8724166 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 206
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 11, 50

Conread position: 688-972
Cow position: chr8:21945983-21945698 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 195
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 114, 17

Conread position: 691-921
Cow position: chr8:32174065-32173834 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 158
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 113, 11

Conread position: 695-972
Cow position: chr8:25157220-25156938 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 52

Conread position: 699-957
Cow position: chr8:41939431-41939694 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 189
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 22, 155

Conread position: 705-966
Cow position: chr8:9809679-9809413 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 180
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 65, 48

Conread position: 726-972
Cow position: chr8:34662909-34662654 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 175
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 83, 27

Conread position: 735-968
Cow position: chr8:21813764-21813987 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 166
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 30, 18

Conread position: 738-971
Cow position: chr8:13559888-13559666 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 164
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 122, 16

Conread position: 774-959
Cow position: chr8:3553945-3553761 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 137
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 29, 60

Conread position: 778-953
Cow position: chr8:27501315-27501488 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 33, 85

Conread position: 793-972
Cow position: chr8:27076341-27076514 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 133
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 58, 0

Conread position: 795-971
Cow position: chr8:22519146-22518973 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 19, 99

Conread position: 797-957
Cow position: chr8:10994105-10994265 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 115
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 60, 125

Conread position: 798-972
Cow position: chr8:23877218-23877395 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 25, 0

Conread position: 815-971
Cow position: chr8:27534348-27534505 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 123
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 42, 0

Conread position: 819-972
Cow position: chr8:10844459-10844609 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 121
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 20, 0

Show alignments to all cow chromosomes.