Cow genome map
| Conread name: | Ss1.1-rfbs3927b_n2.5 |
| Conread position: | 631-972 |
| Cow position: | chr9:44445942-44446296 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 245 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 58, 112 |
| Conread position: | 637-966 |
| Cow position: | chr9:38877641-38877963 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 69, 21 |
| Conread position: | 641-971 |
| Cow position: | chr9:44299620-44299291 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 28, 14 |
| Conread position: | 643-906 |
| Cow position: | chr9:7054443-7054178 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 13, 39 |
| Conread position: | 650-964 |
| Cow position: | chr9:31580042-31580367 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 7, 195 |
| Conread position: | 654-937 |
| Cow position: | chr9:35224386-35224674 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 13, 57 |
| Conread position: | 656-920 |
| Cow position: | chr9:43076606-43076333 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 39, 166 |
| Conread position: | 658-952 |
| Cow position: | chr9:41903891-41904177 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 47, 12 |
| Conread position: | 658-972 |
| Cow position: | chr9:39727281-39727604 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 37, 176 |
| Conread position: | 660-864 |
| Cow position: | chr9:50777508-50777293 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 51, 35 |
| Conread position: | 660-958 |
| Cow position: | chr9:18767540-18767833 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 214 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 98, 36 |
| Conread position: | 660-965 |
| Cow position: | chr9:39742046-39742339 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 104, 31 |
| Conread position: | 664-961 |
| Cow position: | chr9:11045537-11045838 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 57 |
| Conread position: | 666-939 |
| Cow position: | chr9:27961351-27961637 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 26, 59 |
| Conread position: | 666-972 |
| Cow position: | chr9:5607451-5607753 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 27, 85 |
| Conread position: | 676-942 |
| Cow position: | chr9:22939924-22940179 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 108, 7 |
| Conread position: | 688-972 |
| Cow position: | chr9:51335689-51335415 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 18, 50 |
| Conread position: | 691-967 |
| Cow position: | chr9:7328054-7327788 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 169, 44 |
| Conread position: | 702-956 |
| Cow position: | chr9:33078510-33078247 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 106, 51 |
| Conread position: | 708-888 |
| Cow position: | chr9:26479847-26480023 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 34, 44 |
| Conread position: | 738-967 |
| Cow position: | chr9:9579357-9579122 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 64, 151 |
| Conread position: | 745-972 |
| Cow position: | chr9:48373874-48374107 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 20, 8 |
| Conread position: | 790-942 |
| Cow position: | chr9:31540330-31540174 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 796-968 |
| Cow position: | chr9:43536907-43537078 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 66, 19 |
| Conread position: | 813-972 |
| Cow position: | chr9:23108070-23107914 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 822-965 |
| Cow position: | chr9:41296700-41296842 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 39, 125 |
| Conread position: | 828-972 |
| Cow position: | chr9:36839075-36838932 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 141, 0 |
Show alignments to all cow chromosomes.