Cow genome map
| Conread name: | Ss1.1-rfbs3927b_n2.5 |
| Conread position: | 612-964 |
| Cow position: | chrX:10762957-10763286 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 254 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 180, 18 |
| Conread position: | 645-918 |
| Cow position: | chrX:18231107-18231381 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 17, 9 |
| Conread position: | 651-968 |
| Cow position: | chrX:32181728-32182051 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 171 |
| Conread position: | 655-972 |
| Cow position: | chrX:807494-807182 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 14, 53 |
| Conread position: | 657-968 |
| Cow position: | chrX:18469322-18469011 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 38 |
| Conread position: | 658-967 |
| Cow position: | chrX:20715624-20715936 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 212 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 35, 50 |
| Conread position: | 658-968 |
| Cow position: | chrX:17516822-17516514 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 11, 52 |
| Conread position: | 658-971 |
| Cow position: | chrX:9298580-9298884 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 222 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 11, 147 |
| Conread position: | 659-945 |
| Cow position: | chrX:11974072-11973781 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 42, 83 |
| Conread position: | 660-804 |
| Cow position: | chrX:4319236-4319089 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 35, 98 |
| Conread position: | 660-936 |
| Cow position: | chrX:32049569-32049296 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 29, 47 |
| Conread position: | 660-972 |
| Cow position: | chrX:33816443-33816131 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 80, 35 |
| Conread position: | 661-954 |
| Cow position: | chrX:42219158-42218861 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 33, 95 |
| Conread position: | 661-972 |
| Cow position: | chrX:22013719-22013398 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 8, 62 |
| Conread position: | 662-949 |
| Cow position: | chrX:20734772-20734477 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 666-962 |
| Cow position: | chrX:28215719-28215439 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 29, 128 |
| Conread position: | 666-968 |
| Cow position: | chrX:38114473-38114169 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 50 |
| Conread position: | 673-941 |
| Cow position: | chrX:17200996-17200722 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 22, 82 |
| Conread position: | 673-970 |
| Cow position: | chrX:25261161-25261464 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 22, 83 |
| Conread position: | 673-972 |
| Cow position: | chrX:37139896-37139594 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 20, 204 |
| Conread position: | 674-881 |
| Cow position: | chrX:21262393-21262596 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 185, 21 |
| Conread position: | 675-882 |
| Cow position: | chrX:6834506-6834719 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 21, 11 |
| Conread position: | 675-949 |
| Cow position: | chrX:2649829-2650109 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 18, 72 |
| Conread position: | 691-954 |
| Cow position: | chrX:22859848-22859579 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 111, 11 |
| Conread position: | 691-964 |
| Cow position: | chrX:8827273-8827547 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 74, 11 |
| Conread position: | 691-972 |
| Cow position: | chrX:4298576-4298858 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 114, 48 |
| Conread position: | 697-971 |
| Cow position: | chrX:16300462-16300733 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 10, 51 |
| Conread position: | 700-905 |
| Cow position: | chrX:24019894-24020093 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 159, 98 |
| Conread position: | 702-972 |
| Cow position: | chrX:7693221-7693486 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 119, 81 |
| Conread position: | 721-956 |
| Cow position: | chrX:25164029-25163795 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 65, 19 |
| Conread position: | 739-919 |
| Cow position: | chrX:41483817-41483631 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 72, 111 |
| Conread position: | 777-935 |
| Cow position: | chrX:24525163-24525002 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 25, 72 |
| Conread position: | 834-966 |
| Cow position: | chrX:24560144-24560012 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 26, 123 |
Show alignments to all cow chromosomes.