Cow genome map
| Conread name: | Ss1.1-rfcc04b_m13.5 |
| Conread position: | 1-253 |
| Cow position: | chr14:3080719-3080467 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 230, 236 |
| Conread position: | 1-280 |
| Cow position: | chr14:3061698-3061419 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 184, 192 |
| Conread position: | 1-289 |
| Cow position: | chr14:3080635-3080347 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 94, 98 |
| Conread position: | 2-253 |
| Cow position: | chr14:3079962-3079711 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 93, 97 |
| Conread position: | 2-280 |
| Cow position: | chr14:25895410-25895688 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 98, 104 |
| Conread position: | 2-289 |
| Cow position: | chr14:680771-681058 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 200 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-298 |
| Cow position: | chr14:3080130-3079834 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-289 |
| Cow position: | chr14:447550-447836 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-253 |
| Cow position: | chr14:25895328-25895577 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 103, 98 |
| Conread position: | 4-278 |
| Cow position: | chr14:434024-434298 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-289 |
| Cow position: | chr14:680437-680722 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-290 |
| Cow position: | chr14:447635-447921 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 104, 100 |
| Conread position: | 4-298 |
| Cow position: | chr14:433856-434150 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-250 |
| Cow position: | chr14:680355-680599 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-280 |
| Cow position: | chr14:3061021-3060747 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 177, 173 |
| Conread position: | 6-290 |
| Cow position: | chr14:3127890-3127604 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 274, 0 |
| Conread position: | 7-208 |
| Cow position: | chr14:3079873-3079672 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-278 |
| Cow position: | chr14:433775-434046 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 37, 27 |
| Conread position: | 7-280 |
| Cow position: | chr14:447974-448247 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 73, 66 |
| Conread position: | 7-281 |
| Cow position: | chr14:3080545-3080271 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 192 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-281 |
| Cow position: | chr14:3156115-3156389 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-289 |
| Cow position: | chr14:434111-434393 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 196 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-289 |
| Cow position: | chr14:663438-663156 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 194 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 74, 66 |
| Conread position: | 7-289 |
| Cow position: | chr14:680692-680974 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-289 |
| Cow position: | chr14:3061440-3061158 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 102, 95 |
| Conread position: | 7-289 |
| Cow position: | chr14:3156199-3156481 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 64, 73 |
| Conread position: | 7-295 |
| Cow position: | chr14:663354-663066 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 74, 66 |
| Conread position: | 9-289 |
| Cow position: | chr14:3080206-3079927 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 11-308 |
| Cow position: | chr14:3127549-3127252 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-249 |
| Cow position: | chr14:3127968-3127731 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-253 |
| Cow position: | chr14:25895672-25895913 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 52, 57 |
| Conread position: | 12-280 |
| Cow position: | chr14:447727-447995 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 84, 90 |
| Conread position: | 12-289 |
| Cow position: | chr14:3080456-3080179 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 251, 256 |
| Conread position: | 12-289 |
| Cow position: | chr14:3128136-3127859 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 96, 91 |
| Conread position: | 13-254 |
| Cow position: | chr14:3061098-3060857 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-289 |
| Cow position: | chr14:3060929-3060654 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-289 |
| Cow position: | chr14:3061265-3060990 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 67, 59 |
| Conread position: | 19-250 |
| Cow position: | chr14:25895595-25895826 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 165, 172 |
| Conread position: | 20-289 |
| Cow position: | chr14:3080280-3080011 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-250 |
| Cow position: | chr14:25895934-25896162 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-252 |
| Cow position: | chr14:3061341-3061111 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 59, 51 |
| Conread position: | 22-254 |
| Cow position: | chr14:25895514-25895746 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 42, 47 |
| Conread position: | 22-263 |
| Cow position: | chr14:25895094-25895335 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-289 |
| Cow position: | chr14:25895850-25896117 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 246, 251 |
| Conread position: | 22-298 |
| Cow position: | chr14:3156046-3156322 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 73, 77 |
| Conread position: | 23-207 |
| Cow position: | chr14:3156299-3156483 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-218 |
| Cow position: | chr14:3155642-3155837 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 162, 169 |
| Conread position: | 23-250 |
| Cow position: | chr14:3128041-3127814 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 146, 153 |
| Conread position: | 23-250 |
| Cow position: | chr14:25895263-25895490 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-257 |
| Cow position: | chr14:25895767-25896001 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 70, 76 |
| Conread position: | 23-268 |
| Cow position: | chr14:25895179-25895424 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 62, 72 |
| Conread position: | 23-280 |
| Cow position: | chr14:433959-434216 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 57, 50 |
| Conread position: | 23-289 |
| Cow position: | chr14:680624-680890 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-289 |
| Cow position: | chr14:3061172-3060906 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 208, 214 |
| Conread position: | 34-250 |
| Cow position: | chr14:25895022-25895238 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 35-289 |
| Cow position: | chr14:3061496-3061242 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 60, 64 |
| Conread position: | 35-289 |
| Cow position: | chr14:3061580-3061326 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 241, 234 |
| Conread position: | 35-289 |
| Cow position: | chr14:3080013-3079759 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 35-289 |
| Cow position: | chr14:3127609-3127355 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 35-289 |
| Cow position: | chr14:3127777-3127523 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 35-289 |
| Cow position: | chr14:3155570-3155824 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 36, 45 |
| Conread position: | 35-290 |
| Cow position: | chr14:3127693-3127438 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 41-289 |
| Cow position: | chr14:3061742-3061494 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 42-288 |
| Cow position: | chr14:3080762-3080516 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 104, 108 |
| Conread position: | 44-289 |
| Cow position: | chr14:447927-448172 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 49-289 |
| Cow position: | chr14:447512-447752 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 47, 51 |
| Conread position: | 66-289 |
| Cow position: | chr14:3080822-3080599 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.