Cow genome map

Conread name: Ss1.1-rfcc04b_m13.5

Conread position: 1-253
Cow position:
Alignm length: 254
Alignm identity: 161
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 230, 236

Conread position: 1-280
Cow position:
Alignm length: 283
Alignm identity: 190
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 184, 192

Conread position: 1-289
Cow position:
Alignm length: 290
Alignm identity: 194
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 94, 98

Conread position: 2-253
Cow position:
Alignm length: 253
Alignm identity: 178
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 93, 97

Conread position: 2-280
Cow position:
Alignm length: 280
Alignm identity: 183
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 98, 104

Conread position: 2-289
Cow position:
Alignm length: 288
Alignm identity: 200
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 2-298
Cow position:
Alignm length: 297
Alignm identity: 199
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 3-289
Cow position:
Alignm length: 287
Alignm identity: 189
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 4-253
Cow position:
Alignm length: 251
Alignm identity: 168
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 103, 98

Conread position: 4-278
Cow position:
Alignm length: 275
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 4-289
Cow position:
Alignm length: 286
Alignm identity: 197
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 4-290
Cow position:
Alignm length: 289
Alignm identity: 180
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 104, 100

Conread position: 4-298
Cow position:
Alignm length: 295
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 6-250
Cow position:
Alignm length: 245
Alignm identity: 162
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 6-280
Cow position:
Alignm length: 276
Alignm identity: 183
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 177, 173

Conread position: 6-290
Cow position:
Alignm length: 287
Alignm identity: 189
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 274, 0

Conread position: 7-208
Cow position:
Alignm length: 202
Alignm identity: 138
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 7-278
Cow position:
Alignm length: 273
Alignm identity: 189
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 37, 27

Conread position: 7-280
Cow position:
Alignm length: 275
Alignm identity: 181
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 73, 66

Conread position: 7-281
Cow position:
Alignm length: 275
Alignm identity: 192
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 7-281
Cow position:
Alignm length: 275
Alignm identity: 173
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 7-289
Cow position:
Alignm length: 283
Alignm identity: 196
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 7-289
Cow position:
Alignm length: 286
Alignm identity: 194
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 74, 66

Conread position: 7-289
Cow position:
Alignm length: 283
Alignm identity: 186
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 7-289
Cow position:
Alignm length: 284
Alignm identity: 180
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 102, 95

Conread position: 7-289
Cow position:
Alignm length: 285
Alignm identity: 179
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 64, 73

Conread position: 7-295
Cow position:
Alignm length: 293
Alignm identity: 194
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 74, 66

Conread position: 9-289
Cow position:
Alignm length: 281
Alignm identity: 188
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 6, 0

Conread position: 11-308
Cow position:
Alignm length: 298
Alignm identity: 193
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 12-249
Cow position:
Alignm length: 238
Alignm identity: 172
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 12-253
Cow position:
Alignm length: 244
Alignm identity: 161
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 52, 57

Conread position: 12-280
Cow position:
Alignm length: 270
Alignm identity: 177
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 84, 90

Conread position: 12-289
Cow position:
Alignm length: 279
Alignm identity: 186
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 251, 256

Conread position: 12-289
Cow position:
Alignm length: 280
Alignm identity: 182
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 96, 91

Conread position: 13-254
Cow position:
Alignm length: 242
Alignm identity: 160
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 14-289
Cow position:
Alignm length: 276
Alignm identity: 190
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 14-289
Cow position:
Alignm length: 277
Alignm identity: 181
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 67, 59

Conread position: 19-250
Cow position:
Alignm length: 233
Alignm identity: 161
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 165, 172

Conread position: 20-289
Cow position:
Alignm length: 270
Alignm identity: 181
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 22-250
Cow position:
Alignm length: 229
Alignm identity: 149
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 22-252
Cow position:
Alignm length: 232
Alignm identity: 159
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 59, 51

Conread position: 22-254
Cow position:
Alignm length: 234
Alignm identity: 164
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 42, 47

Conread position: 22-263
Cow position:
Alignm length: 242
Alignm identity: 156
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 22-289
Cow position:
Alignm length: 269
Alignm identity: 174
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 246, 251

Conread position: 22-298
Cow position:
Alignm length: 278
Alignm identity: 177
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 73, 77

Conread position: 23-207
Cow position:
Alignm length: 185
Alignm identity: 129
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 23-218
Cow position:
Alignm length: 197
Alignm identity: 137
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 162, 169

Conread position: 23-250
Cow position:
Alignm length: 229
Alignm identity: 159
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 146, 153

Conread position: 23-250
Cow position:
Alignm length: 228
Alignm identity: 154
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 23-257
Cow position:
Alignm length: 236
Alignm identity: 155
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 70, 76

Conread position: 23-268
Cow position:
Alignm length: 248
Alignm identity: 175
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 62, 72

Conread position: 23-280
Cow position:
Alignm length: 261
Alignm identity: 186
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 57, 50

Conread position: 23-289
Cow position:
Alignm length: 267
Alignm identity: 177
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 23-289
Cow position:
Alignm length: 268
Alignm identity: 180
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 208, 214

Conread position: 34-250
Cow position:
Alignm length: 217
Alignm identity: 140
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 35-289
Cow position:
Alignm length: 257
Alignm identity: 174
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 60, 64

Conread position: 35-289
Cow position:
Alignm length: 256
Alignm identity: 172
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 241, 234

Conread position: 35-289
Cow position:
Alignm length: 255
Alignm identity: 170
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 35-289
Cow position:
Alignm length: 255
Alignm identity: 162
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 35-289
Cow position:
Alignm length: 255
Alignm identity: 160
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 35-289
Cow position:
Alignm length: 256
Alignm identity: 168
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 36, 45

Conread position: 35-290
Cow position:
Alignm length: 256
Alignm identity: 162
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 41-289
Cow position:
Alignm length: 249
Alignm identity: 166
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 42-288
Cow position:
Alignm length: 248
Alignm identity: 162
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 104, 108

Conread position: 44-289
Cow position:
Alignm length: 246
Alignm identity: 160
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 49-289
Cow position:
Alignm length: 243
Alignm identity: 158
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 47, 51

Conread position: 66-289
Cow position:
Alignm length: 224
Alignm identity: 150
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.