Cow genome map


           Conread name:
           Ss1.1-rfcc04b_m13.5
        

               Conread position:
               1-256
               

               Cow position:
               
               

               Alignm length:
               259
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               33, 27
               

               Conread position:
               1-280
               

               Cow position:
               
               

               Alignm length:
               280
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-205
               

               Cow position:
               
               

               Alignm length:
               204
               

               Alignm identity:
               140
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-256
               

               Cow position:
               
               

               Alignm length:
               255
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-257
               

               Cow position:
               
               

               Alignm length:
               256
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-289
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               189
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               78, 71
               

               Conread position:
               2-289
               

               Cow position:
               
               

               Alignm length:
               288
               

               Alignm identity:
               181
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-207
               

               Cow position:
               
               

               Alignm length:
               205
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               4-250
               

               Cow position:
               
               

               Alignm length:
               247
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               4-281
               

               Cow position:
               
               

               Alignm length:
               279
               

               Alignm identity:
               173
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               163, 158
               

               Conread position:
               4-289
               

               Cow position:
               
               

               Alignm length:
               286
               

               Alignm identity:
               181
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               4-289
               

               Cow position:
               
               

               Alignm length:
               289
               

               Alignm identity:
               188
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               85, 96
               

               Conread position:
               5-195
               

               Cow position:
               
               

               Alignm length:
               192
               

               Alignm identity:
               136
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               178, 174
               

               Conread position:
               5-250
               

               Cow position:
               
               

               Alignm length:
               248
               

               Alignm identity:
               165
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               191, 196
               

               Conread position:
               7-250
               

               Cow position:
               
               

               Alignm length:
               244
               

               Alignm identity:
               162
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               7-281
               

               Cow position:
               
               

               Alignm length:
               275
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               7-289
               

               Cow position:
               
               

               Alignm length:
               283
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               7-289
               

               Cow position:
               
               

               Alignm length:
               283
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-250
               

               Cow position:
               
               

               Alignm length:
               243
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-289
               

               Cow position:
               
               

               Alignm length:
               285
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               77, 91
               

               Conread position:
               9-304
               

               Cow position:
               
               

               Alignm length:
               297
               

               Alignm identity:
               197
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               23, 18
               

               Conread position:
               11-289
               

               Cow position:
               
               

               Alignm length:
               279
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               12-206
               

               Cow position:
               
               

               Alignm length:
               195
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               12-250
               

               Cow position:
               
               

               Alignm length:
               239
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               12-280
               

               Cow position:
               
               

               Alignm length:
               271
               

               Alignm identity:
               172
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               69, 61
               

               Conread position:
               12-280
               

               Cow position:
               
               

               Alignm length:
               271
               

               Alignm identity:
               194
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               218, 225
               

               Conread position:
               12-280
               

               Cow position:
               
               

               Alignm length:
               271
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               67, 61
               

               Conread position:
               12-321
               

               Cow position:
               
               

               Alignm length:
               316
               

               Alignm identity:
               203
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               41, 22
               

               Conread position:
               13-257
               

               Cow position:
               
               

               Alignm length:
               245
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               14-281
               

               Cow position:
               
               

               Alignm length:
               268
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               14-289
               

               Cow position:
               
               

               Alignm length:
               276
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               14-298
               

               Cow position:
               
               

               Alignm length:
               286
               

               Alignm identity:
               198
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               169, 162
               

               Conread position:
               14-298
               

               Cow position:
               
               

               Alignm length:
               286
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               253, 249
               

               Conread position:
               20-278
               

               Cow position:
               
               

               Alignm length:
               259
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               21-249
               

               Cow position:
               
               

               Alignm length:
               231
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               11, 6
               

               Conread position:
               21-289
               

               Cow position:
               
               

               Alignm length:
               269
               

               Alignm identity:
               167
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               22-250
               

               Cow position:
               
               

               Alignm length:
               229
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               22-277
               

               Cow position:
               
               

               Alignm length:
               257
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               73, 77
               

               Conread position:
               22-277
               

               Cow position:
               
               

               Alignm length:
               258
               

               Alignm identity:
               187
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               63, 67
               

               Conread position:
               22-278
               

               Cow position:
               
               

               Alignm length:
               258
               

               Alignm identity:
               186
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               245, 235
               

               Conread position:
               22-281
               

               Cow position:
               
               

               Alignm length:
               260
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               22-301
               

               Cow position:
               
               

               Alignm length:
               283
               

               Alignm identity:
               180
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               58, 51
               

               Conread position:
               23-193
               

               Cow position:
               
               

               Alignm length:
               172
               

               Alignm identity:
               124
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               72, 76
               

               Conread position:
               23-211
               

               Cow position:
               
               

               Alignm length:
               190
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               72, 16
               

               Conread position:
               23-250
               

               Cow position:
               
               

               Alignm length:
               229
               

               Alignm identity:
               148
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               124, 128
               

               Conread position:
               23-250
               

               Cow position:
               
               

               Alignm length:
               229
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               85, 81
               

               Conread position:
               23-280
               

               Cow position:
               
               

               Alignm length:
               258
               

               Alignm identity:
               168
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               23-280
               

               Cow position:
               
               

               Alignm length:
               258
               

               Alignm identity:
               170
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               23-281
               

               Cow position:
               
               

               Alignm length:
               259
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               23-288
               

               Cow position:
               
               

               Alignm length:
               267
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               85, 81
               

               Conread position:
               23-289
               

               Cow position:
               
               

               Alignm length:
               267
               

               Alignm identity:
               166
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               23-289
               

               Cow position:
               
               

               Alignm length:
               267
               

               Alignm identity:
               166
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               23-289
               

               Cow position:
               
               

               Alignm length:
               267
               

               Alignm identity:
               166
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               23-289
               

               Cow position:
               
               

               Alignm length:
               267
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               23-289
               

               Cow position:
               
               

               Alignm length:
               269
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               208, 214
               

               Conread position:
               23-289
               

               Cow position:
               
               

               Alignm length:
               267
               

               Alignm identity:
               183
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               23-289
               

               Cow position:
               
               

               Alignm length:
               268
               

               Alignm identity:
               175
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               53, 57
               

               Conread position:
               23-289
               

               Cow position:
               
               

               Alignm length:
               269
               

               Alignm identity:
               183
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               32, 37
               

               Conread position:
               23-289
               

               Cow position:
               
               

               Alignm length:
               267
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               23-289
               

               Cow position:
               
               

               Alignm length:
               268
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               160, 156
               

               Conread position:
               23-298
               

               Cow position:
               
               

               Alignm length:
               277
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               70, 75
               

               Conread position:
               23-311
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               277, 0
               

               Conread position:
               34-253
               

               Cow position:
               
               

               Alignm length:
               221
               

               Alignm identity:
               145
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               19, 26
               

               Conread position:
               35-281
               

               Cow position:
               
               

               Alignm length:
               247
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               35-281
               

               Cow position:
               
               

               Alignm length:
               247
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               35-289
               

               Cow position:
               
               

               Alignm length:
               255
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               35-289
               

               Cow position:
               
               

               Alignm length:
               255
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               35-289
               

               Cow position:
               
               

               Alignm length:
               255
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               35-289
               

               Cow position:
               
               

               Alignm length:
               255
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               35-289
               

               Cow position:
               
               

               Alignm length:
               255
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               35-289
               

               Cow position:
               
               

               Alignm length:
               255
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               35-289
               

               Cow position:
               
               

               Alignm length:
               255
               

               Alignm identity:
               171
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               35-298
               

               Cow position:
               
               

               Alignm length:
               264
               

               Alignm identity:
               170
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               37-321
               

               Cow position:
               
               

               Alignm length:
               288
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               263, 0
               

               Conread position:
               39-277
               

               Cow position:
               
               

               Alignm length:
               239
               

               Alignm identity:
               166
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               39-289
               

               Cow position:
               
               

               Alignm length:
               252
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               213, 224
               

               Conread position:
               41-303
               

               Cow position:
               
               

               Alignm length:
               267
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               46, 58
               

               Conread position:
               42-251
               

               Cow position:
               
               

               Alignm length:
               210
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               50-278
               

               Cow position:
               
               

               Alignm length:
               230
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               35, 42
               

               Conread position:
               55-289
               

               Cow position:
               
               

               Alignm length:
               236
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               156, 164
               

               Conread position:
               65-289
               

               Cow position:
               
               

               Alignm length:
               226
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               118, 114
               
Show alignments to all cow chromosomes.