Cow genome map
| Conread name: | Ss1.1-rfcc04b_m13.5 |
| Conread position: | 1-166 |
| Cow position: | chr4:65261343-65261178 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 91, 98 |
| Conread position: | 2-211 |
| Cow position: | chr4:65494641-65494432 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 83, 97 |
| Conread position: | 2-311 |
| Cow position: | chr4:65494809-65494499 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 178 |
| Conread position: | 3-258 |
| Cow position: | chr4:65261425-65261170 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 82, 103 |
| Conread position: | 9-280 |
| Cow position: | chr4:65703534-65703263 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 86, 90 |
| Conread position: | 9-289 |
| Cow position: | chr4:65261587-65261307 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 70, 64 |
| Conread position: | 9-289 |
| Cow position: | chr4:65703450-65703170 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 98 |
| Conread position: | 9-301 |
| Cow position: | chr4:65121666-65121958 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 80, 90 |
| Conread position: | 10-289 |
| Cow position: | chr4:65350347-65350623 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 266, 136 |
| Conread position: | 10-289 |
| Cow position: | chr4:65702828-65702549 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 186, 191 |
| Conread position: | 11-268 |
| Cow position: | chr4:65121752-65122009 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-206 |
| Cow position: | chr4:65121192-65121386 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-280 |
| Cow position: | chr4:65702742-65702474 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 83, 87 |
| Conread position: | 12-289 |
| Cow position: | chr4:65121837-65122114 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 196, 210 |
| Conread position: | 13-278 |
| Cow position: | chr4:65494888-65494617 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 35, 92 |
| Conread position: | 13-311 |
| Cow position: | chr4:65261499-65261200 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 278, 282 |
| Conread position: | 14-277 |
| Cow position: | chr4:65350516-65350779 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 73, 92 |
| Conread position: | 14-280 |
| Cow position: | chr4:65146474-65146740 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 41, 46 |
| Conread position: | 20-258 |
| Cow position: | chr4:65494707-65494469 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 72, 79 |
| Conread position: | 20-311 |
| Cow position: | chr4:65494965-65494667 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 112, 258 |
| Conread position: | 23-289 |
| Cow position: | chr4:65350108-65350374 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 253, 246 |
| Conread position: | 23-311 |
| Cow position: | chr4:65703604-65703315 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 37, 26 |
| Conread position: | 33-220 |
| Cow position: | chr4:65546363-65546173 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 176, 0 |
| Conread position: | 41-283 |
| Cow position: | chr4:65146417-65146659 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 155, 162 |
| Conread position: | 44-278 |
| Cow position: | chr4:65703667-65703433 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 47-280 |
| Cow position: | chr4:65495022-65494783 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 50-296 |
| Cow position: | chr4:65121146-65121392 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 53, 57 |
| Conread position: | 51-253 |
| Cow position: | chr4:65157938-65158140 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.