Cow genome map
| Conread name: | Ss1.1-rgul0101_i8.5 |
| Conread position: | 1-512 |
| Cow position: | chr13:39984011-39984523 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 1-520 |
| Cow position: | chr13:39984347-39984866 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 504 |
| Conread position: | 1-531 |
| Cow position: | chr13:39983927-39984456 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 96 |
| Conread position: | 1-573 |
| Cow position: | chr13:39984263-39984838 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 562 |
| Conread position: | 1-594 |
| Cow position: | chr13:56292833-56292235 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 376 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 17, 58 |
| Conread position: | 17-316 |
| Cow position: | chr13:56292070-56291770 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 216, 282 |
| Conread position: | 17-397 |
| Cow position: | chr13:56292154-56291773 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 186 |
| Conread position: | 17-478 |
| Cow position: | chr13:24163119-24163579 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 154, 176 |
| Conread position: | 17-484 |
| Cow position: | chr13:22124973-22125440 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 285 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 139, 133 |
| Conread position: | 17-484 |
| Cow position: | chr13:24162699-24163166 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 285 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 139, 133 |
| Conread position: | 17-597 |
| Cow position: | chr13:56292401-56291821 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 187 |
| Conread position: | 18-594 |
| Cow position: | chr13:56333677-56334265 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 364 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 18, 12 |
| Conread position: | 19-464 |
| Cow position: | chr13:39984450-39984895 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 345, 332 |
| Conread position: | 19-594 |
| Cow position: | chr13:39984114-39984692 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 77 |
| Conread position: | 21-505 |
| Cow position: | chr13:22124725-22125209 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 294 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 86, 98 |
| Conread position: | 21-525 |
| Cow position: | chr13:56333512-56334015 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 307 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 135, 131 |
| Conread position: | 24-505 |
| Cow position: | chr13:22125148-22125629 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 290 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 83, 96 |
| Conread position: | 32-493 |
| Cow position: | chr13:22124904-22125365 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 277 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 142, 157 |
| Conread position: | 32-493 |
| Cow position: | chr13:24162630-24163091 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 276 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 142, 157 |
| Conread position: | 34-505 |
| Cow position: | chr13:24162464-24162935 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 285 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 76, 62 |
| Conread position: | 35-251 |
| Cow position: | chr13:39930962-39931176 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 79, 73 |
| Conread position: | 35-468 |
| Cow position: | chr13:56333610-56334043 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 274 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 156, 169 |
| Conread position: | 35-485 |
| Cow position: | chr13:22125243-22125693 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 276 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 148, 160 |
| Conread position: | 35-493 |
| Cow position: | chr13:22124823-22125281 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 275 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 279, 285 |
| Conread position: | 35-493 |
| Cow position: | chr13:24162549-24163007 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 282 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 79, 72 |
| Conread position: | 35-502 |
| Cow position: | chr13:39930710-39931175 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 72 |
| Conread position: | 35-505 |
| Cow position: | chr13:24162885-24163355 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 283 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 71, 84 |
| Conread position: | 35-553 |
| Cow position: | chr13:24162969-24163486 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 308 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 220, 226 |
| Conread position: | 36-569 |
| Cow position: | chr13:39930627-39931160 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 71 |
| Conread position: | 39-384 |
| Cow position: | chr13:39984554-39984899 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 47-526 |
| Cow position: | chr13:56333874-56334359 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 309 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 63, 67 |
| Conread position: | 69-481 |
| Cow position: | chr13:56292183-56291773 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 16 |
| Conread position: | 127-512 |
| Cow position: | chr13:56292875-56292494 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 247 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 22, 100 |
| Conread position: | 162-561 |
| Cow position: | chr13:39930585-39930987 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 345, 0 |
| Conread position: | 202-515 |
| Cow position: | chr13:56317929-56318242 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 56, 72 |
| Conread position: | 245-561 |
| Cow position: | chr13:39930584-39930903 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 262, 0 |
Show alignments to all cow chromosomes.