Cow genome map

Conread name: Ss1.1-rgul0101_i8.5

Conread position: 1-561
Cow position:
Alignm length: 570
Alignm identity: 352
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 19, 118

Conread position: 1-596
Cow position:
Alignm length: 606
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 105

Conread position: 3-515
Cow position:
Alignm length: 515
Alignm identity: 317
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 105, 116

Conread position: 3-636
Cow position:
Alignm length: 647
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 118

Conread position: 4-596
Cow position:
Alignm length: 602
Alignm identity: 365
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 28, 19

Conread position: 7-470
Cow position:
Alignm length: 467
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 91

Conread position: 7-507
Cow position:
Alignm length: 505
Alignm identity: 305
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 112, 94

Conread position: 7-512
Cow position:
Alignm length: 507
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 264

Conread position: 7-516
Cow position:
Alignm length: 515
Alignm identity: 321
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 57, 65

Conread position: 7-568
Cow position:
Alignm length: 569
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 55

Conread position: 7-635
Cow position:
Alignm length: 637
Alignm identity: 383
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 510, 555

Conread position: 7-636
Cow position:
Alignm length: 640
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 197

Conread position: 14-502
Cow position:
Alignm length: 490
Alignm identity: 296
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 205, 10

Conread position: 14-512
Cow position:
Alignm length: 504
Alignm identity: 303
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 58, 11

Conread position: 18-488
Cow position:
Alignm length: 474
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 175

Conread position: 18-494
Cow position:
Alignm length: 479
Alignm identity: 300
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 297, 346

Conread position: 18-512
Cow position:
Alignm length: 496
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 430, 437

Conread position: 19-508
Cow position:
Alignm length: 491
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 182

Conread position: 19-512
Cow position:
Alignm length: 495
Alignm identity: 290
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 258, 269

Conread position: 19-515
Cow position:
Alignm length: 500
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 91

Conread position: 19-530
Cow position:
Alignm length: 515
Alignm identity: 316
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 98, 93

Conread position: 19-561
Cow position:
Alignm length: 550
Alignm identity: 336
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 89, 99

Conread position: 20-387
Cow position:
Alignm length: 370
Alignm identity: 230
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 101, 87

Conread position: 20-396
Cow position:
Alignm length: 377
Alignm identity: 227
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 20-463
Cow position:
Alignm length: 447
Alignm identity: 284
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 47, 51

Conread position: 20-507
Cow position:
Alignm length: 490
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 90

Conread position: 20-508
Cow position:
Alignm length: 492
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 100

Conread position: 20-512
Cow position:
Alignm length: 493
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 20-512
Cow position:
Alignm length: 493
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 20-512
Cow position:
Alignm length: 498
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 22

Conread position: 20-530
Cow position:
Alignm length: 513
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 76

Conread position: 20-596
Cow position:
Alignm length: 586
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 13

Conread position: 20-635
Cow position:
Alignm length: 626
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 517, 484

Conread position: 20-636
Cow position:
Alignm length: 628
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 52

Conread position: 21-493
Cow position:
Alignm length: 476
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 64

Conread position: 21-572
Cow position:
Alignm length: 559
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 64

Conread position: 24-432
Cow position:
Alignm length: 411
Alignm identity: 262
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 95, 84

Conread position: 24-486
Cow position:
Alignm length: 466
Alignm identity: 274
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 257, 274

Conread position: 24-507
Cow position:
Alignm length: 486
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 96

Conread position: 24-512
Cow position:
Alignm length: 492
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 104

Conread position: 24-512
Cow position:
Alignm length: 490
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 96

Conread position: 24-562
Cow position:
Alignm length: 544
Alignm identity: 330
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 157, 177

Conread position: 24-595
Cow position:
Alignm length: 579
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 95

Conread position: 25-512
Cow position:
Alignm length: 488
Alignm identity: 301
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 26-508
Cow position:
Alignm length: 487
Alignm identity: 301
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 77, 69

Conread position: 26-512
Cow position:
Alignm length: 490
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 168

Conread position: 26-515
Cow position:
Alignm length: 494
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 44

Conread position: 26-516
Cow position:
Alignm length: 492
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 69

Conread position: 26-573
Cow position:
Alignm length: 558
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 33

Conread position: 26-614
Cow position:
Alignm length: 601
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 84

Conread position: 26-614
Cow position:
Alignm length: 601
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 88

Conread position: 26-635
Cow position:
Alignm length: 622
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 93

Conread position: 28-429
Cow position:
Alignm length: 406
Alignm identity: 253
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 38, 32

Conread position: 32-346
Cow position:
Alignm length: 318
Alignm identity: 204
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 57, 63

Conread position: 34-309
Cow position:
Alignm length: 276
Alignm identity: 175
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 34-492
Cow position:
Alignm length: 463
Alignm identity: 281
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 132, 73

Conread position: 34-508
Cow position:
Alignm length: 476
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 145

Conread position: 35-346
Cow position:
Alignm length: 313
Alignm identity: 192
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 16, 23

Conread position: 35-393
Cow position:
Alignm length: 359
Alignm identity: 225
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 35-395
Cow position:
Alignm length: 364
Alignm identity: 226
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 243, 235

Conread position: 35-400
Cow position:
Alignm length: 367
Alignm identity: 226
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 361, 0

Conread position: 35-420
Cow position:
Alignm length: 390
Alignm identity: 240
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 75, 85

Conread position: 35-429
Cow position:
Alignm length: 396
Alignm identity: 236
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 322, 313

Conread position: 35-429
Cow position:
Alignm length: 396
Alignm identity: 234
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 229, 234

Conread position: 35-429
Cow position:
Alignm length: 395
Alignm identity: 250
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 35-432
Cow position:
Alignm length: 402
Alignm identity: 264
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 75, 85

Conread position: 35-434
Cow position:
Alignm length: 406
Alignm identity: 265
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 86, 75

Conread position: 35-486
Cow position:
Alignm length: 454
Alignm identity: 284
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 169, 163

Conread position: 35-492
Cow position:
Alignm length: 460
Alignm identity: 290
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 158, 169

Conread position: 35-492
Cow position:
Alignm length: 459
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 85

Conread position: 35-492
Cow position:
Alignm length: 459
Alignm identity: 271
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 382, 377

Conread position: 35-496
Cow position:
Alignm length: 468
Alignm identity: 296
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 32, 37

Conread position: 35-508
Cow position:
Alignm length: 476
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 151

Conread position: 35-508
Cow position:
Alignm length: 476
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 75

Conread position: 35-508
Cow position:
Alignm length: 475
Alignm identity: 283
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 329, 335

Conread position: 35-512
Cow position:
Alignm length: 483
Alignm identity: 283
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 85, 60

Conread position: 35-512
Cow position:
Alignm length: 479
Alignm identity: 296
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 169, 165

Conread position: 35-512
Cow position:
Alignm length: 480
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 121

Conread position: 35-512
Cow position:
Alignm length: 481
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 27

Conread position: 35-512
Cow position:
Alignm length: 480
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 126

Conread position: 35-513
Cow position:
Alignm length: 485
Alignm identity: 307
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 163, 168

Conread position: 35-525
Cow position:
Alignm length: 495
Alignm identity: 306
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 77, 69

Conread position: 35-543
Cow position:
Alignm length: 514
Alignm identity: 321
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 163, 168

Conread position: 35-573
Cow position:
Alignm length: 546
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 76

Conread position: 35-596
Cow position:
Alignm length: 569
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 84

Conread position: 35-636
Cow position:
Alignm length: 616
Alignm identity: 382
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 67, 61

Conread position: 41-507
Cow position:
Alignm length: 472
Alignm identity: 286
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 23, 230

Conread position: 43-594
Cow position:
Alignm length: 558
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 28

Conread position: 44-512
Cow position:
Alignm length: 473
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 69

Conread position: 45-449
Cow position:
Alignm length: 406
Alignm identity: 241
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 128, 134

Conread position: 47-432
Cow position:
Alignm length: 388
Alignm identity: 236
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 73, 60

Conread position: 47-437
Cow position:
Alignm length: 401
Alignm identity: 250
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 157, 136

Conread position: 47-507
Cow position:
Alignm length: 464
Alignm identity: 281
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 71, 61

Conread position: 47-515
Cow position:
Alignm length: 470
Alignm identity: 288
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 310, 302

Conread position: 49-486
Cow position:
Alignm length: 442
Alignm identity: 275
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 57, 46

Conread position: 53-432
Cow position:
Alignm length: 383
Alignm identity: 239
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 52, 43

Conread position: 56-512
Cow position:
Alignm length: 460
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 40

Conread position: 118-573
Cow position:
Alignm length: 461
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 80

Conread position: 119-515
Cow position:
Alignm length: 400
Alignm identity: 249
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 163, 147

Conread position: 123-493
Cow position:
Alignm length: 372
Alignm identity: 226
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 326, 332

Conread position: 123-512
Cow position:
Alignm length: 393
Alignm identity: 258
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 67, 80

Conread position: 131-396
Cow position:
Alignm length: 269
Alignm identity: 181
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 123, 138

Conread position: 131-492
Cow position:
Alignm length: 363
Alignm identity: 219
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 44, 53

Conread position: 131-579
Cow position:
Alignm length: 454
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 73

Conread position: 131-594
Cow position:
Alignm length: 470
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 55

Conread position: 133-635
Cow position:
Alignm length: 516
Alignm identity: 308
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 59, 67

Conread position: 137-429
Cow position:
Alignm length: 294
Alignm identity: 189
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 221, 210

Conread position: 137-492
Cow position:
Alignm length: 357
Alignm identity: 217
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 151, 145

Conread position: 138-512
Cow position:
Alignm length: 377
Alignm identity: 243
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 12, 151

Conread position: 162-512
Cow position:
Alignm length: 355
Alignm identity: 223
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 42, 38

Conread position: 162-588
Cow position:
Alignm length: 433
Alignm identity: 276
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 11, 17

Conread position: 201-515
Cow position:
Alignm length: 315
Alignm identity: 201
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 201-635
Cow position:
Alignm length: 445
Alignm identity: 285
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 336, 313

Conread position: 202-530
Cow position:
Alignm length: 330
Alignm identity: 214
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 155, 145

Conread position: 203-512
Cow position:
Alignm length: 312
Alignm identity: 206
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 244, 253

Conread position: 203-512
Cow position:
Alignm length: 312
Alignm identity: 207
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 52, 84

Conread position: 203-536
Cow position:
Alignm length: 336
Alignm identity: 222
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 68, 60

Conread position: 215-480
Cow position:
Alignm length: 267
Alignm identity: 172
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 142, 132

Conread position: 266-507
Cow position:
Alignm length: 242
Alignm identity: 154
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 278-515
Cow position:
Alignm length: 240
Alignm identity: 159
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 147, 168

Show alignments to all cow chromosomes.