Cow genome map
| Conread name: | Ss1.1-rgul0101_i8.5 |
| Conread position: | 1-481 |
| Cow position: | chr17:22589652-22589173 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 286 |
| Conread position: | 1-506 |
| Cow position: | chr17:22452183-22451677 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-562 |
| Cow position: | chr17:22499281-22498716 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 263 |
| Conread position: | 1-562 |
| Cow position: | chr17:22589820-22589255 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 72 |
| Conread position: | 1-567 |
| Cow position: | chr17:22552318-22551748 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 422 |
| Conread position: | 1-568 |
| Cow position: | chr17:22452268-22451696 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 269 |
| Conread position: | 1-573 |
| Cow position: | chr17:22552066-22551491 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 120 |
| Conread position: | 1-573 |
| Cow position: | chr17:22590072-22589497 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 193 |
| Conread position: | 1-594 |
| Cow position: | chr17:22589904-22589307 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 95 |
| Conread position: | 1-594 |
| Cow position: | chr17:22590240-22589643 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 152 |
| Conread position: | 1-635 |
| Cow position: | chr17:22552906-22552264 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 572 |
| Conread position: | 1-636 |
| Cow position: | chr17:22552234-22551591 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 562 |
| Conread position: | 3-418 |
| Cow position: | chr17:22551896-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 115 |
| Conread position: | 3-430 |
| Cow position: | chr17:22473534-22473963 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 69 |
| Conread position: | 3-560 |
| Cow position: | chr17:22589734-22589173 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 70 |
| Conread position: | 3-636 |
| Cow position: | chr17:22473202-22473839 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 354, 60 |
| Conread position: | 7-562 |
| Cow position: | chr17:22552731-22552173 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 505, 0 |
| Conread position: | 12-636 |
| Cow position: | chr17:22589975-22589345 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 9 |
| Conread position: | 13-636 |
| Cow position: | chr17:22590311-22589681 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 57 |
| Conread position: | 14-594 |
| Cow position: | chr17:22553059-22552477 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 499, 7 |
| Conread position: | 14-636 |
| Cow position: | chr17:22473294-22473923 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 189 |
| Conread position: | 14-636 |
| Cow position: | chr17:22552555-22551927 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 7 |
| Conread position: | 14-636 |
| Cow position: | chr17:22552640-22552011 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 70 |
| Conread position: | 17-502 |
| Cow position: | chr17:22551965-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 97 |
| Conread position: | 17-589 |
| Cow position: | chr17:22553141-22552567 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 45 |
| Conread position: | 19-632 |
| Cow position: | chr17:22499178-22498558 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 376 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 241, 268 |
| Conread position: | 20-410 |
| Cow position: | chr17:22498841-22498460 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 52, 39 |
| Conread position: | 20-494 |
| Cow position: | chr17:22499093-22498619 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 302 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 85, 75 |
| Conread position: | 24-512 |
| Cow position: | chr17:22452327-22451839 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 89 |
| Conread position: | 26-636 |
| Cow position: | chr17:22552460-22551843 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 36 |
| Conread position: | 34-491 |
| Cow position: | chr17:22498995-22498538 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 286 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 323, 313 |
| Conread position: | 35-594 |
| Cow position: | chr17:22452400-22451838 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 36 |
| Conread position: | 35-636 |
| Cow position: | chr17:22499330-22498722 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 322, 312 |
| Conread position: | 41-571 |
| Cow position: | chr17:22473405-22473938 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 223 |
| Conread position: | 80-636 |
| Cow position: | chr17:22553162-22552599 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 437, 460 |
| Conread position: | 117-508 |
| Cow position: | chr17:22499332-22498942 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 387, 0 |
| Conread position: | 118-509 |
| Cow position: | chr17:22452401-22452011 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 251 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 386, 0 |
| Conread position: | 139-573 |
| Cow position: | chr17:22499394-22498958 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 381, 423 |
| Conread position: | 150-635 |
| Cow position: | chr17:22473262-22473754 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 111 |
| Conread position: | 193-507 |
| Cow position: | chr17:22452410-22452096 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 76 |
| Conread position: | 243-573 |
| Cow position: | chr17:22553167-22552835 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 270, 319 |
| Conread position: | 277-508 |
| Cow position: | chr17:22452410-22452179 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 160, 145 |
Show alignments to all cow chromosomes.